• Re: Response to Peter N. (test)

    From John Harshman@21:1/5 to John Harshman on Thu Sep 8 09:53:59 2022
    On 9/8/22 9:53 AM, John Harshman wrote:
    On 9/8/22 6:59 AM, Peter Nyikos wrote:
    On Tuesday, August 30, 2022 at 10:55:52 PM UTC-4, John Harshman wrote:
    On 8/30/22 2:34 PM, Peter Nyikos wrote:
    On Monday, August 29, 2022 at 4:28:18 PM UTC-4, John Harshman wrote:

    More importantly, the article in question is a legitimate
    contribution to the paleontology literature,

    How do you know? Did you investigate the matrix (or matrices?) that
    Mortimer and co.
    used to generate their phylogenetic trees in Fig. 17 and Fig. 18?

    No. I just read the paper. Did you?

    I've read enough of it to see two deficiencies and several peculiar
    details.
    Which of those details is relevant to whether the article is a
    legitimate contribution, and if so, why?

    Do you disagree?

    Yes. To begin with, a simple scan shows that they nowhere mention
    which taxon
    they used to root the tree. Very sloppy writing, refereeing, and
    editing is to blame, wouldn't you say?
    Not true. The outgroup to Maniraptoromorpha is stated to be a large
    selection of taxa, with Dilophosaurus as the ultimate outgroup.

    Just above Fig. 17 is the following sentence:

    "As *Ornitholestes* has never been recovered as a tyrannosauroid it
    is considered the most basal well supported member of Maniraptoromorpha here."

    And yet, Ornitholestes appears neither in Fig. 17 nor Fig. 18. Their
    trees apparently don't
    show the breadth of Maniraptoromorpha. More sloppiness.
    That's because as stated those figures were pruned to emphasize
    important stuff. For the full tree, see F

    ig. S2.>
    Also, to a layman like me, it seems peculiar that they would use 700
    characters,
    and claim that their choice is better than that of Maryanska et. al.,
    and yet it takes so little change to make some pretty big shifts.
    Not clear what part of that seems peculiar. But the last bit is a
    problem that's common to trees using paleontological data. It results
    from the limited information in skeletal characters and the large amount
    of missing data even for skeletal characters.

    "A Deinonychosauria including troodontids and dromaeosaurids was
    recovered as in many recent analyses. Positioning troodontids closer to
    Aves than dromaeosaurids only requires a single additional step, but non-eumaniraptoran troodontids are less parsimonious at six more steps. Scansoriopterygids form the first branch of Avialae, matching their stratigraphic placement, and constraining them as basal paravians
    instead is only one step longer. Their other suggested position as oviraptorosaurs requires 12 more steps though, so is unlikely. While Pedopenna emerges as a scansoriopterygid in the MPTs, one step moves the fragmentary specimen to Archaeopterygidae instead. The juvenile
    Zhongornis branches next, with alternative positions in
    Scansoriopterygidae or Confuciusornithiformes being four and five steps longer respectively."

    The placement of the enigmatic Scansoriopterygids has been highly
    varied. Check out:
    https://en.wikipedia.org/wiki/Scansoriopterygidae
    The only tree it shows puts them well outside Avialae, and above the
    tree there is a long
    discussion of numerous other analyses.
    Not sure of your point. Are you claiming that we should judge a
    phylogeny on the basis of whether it's represented in Wikipedia?

    I suggest you compare the Mortimer et.al. matrix with one or more of
    the ones
    among the analyses listed.
    The proper citation, incidentally, is "Hartman et al.". And haven't the authors done that comparison already? See Fig. S1. I also note that the legitimacy of all this is enhanced, if any such were necessary, by my observation that the editor was Hans-Dieter Sues.

    I ask again: what, if any of this, is relevant to the question that
    began the post?


    Having posting problems. This is a test.

    --- SoupGate-Win32 v1.05
    * Origin: fsxNet Usenet Gateway (21:1/5)
  • From John Harshman@21:1/5 to Peter Nyikos on Thu Sep 8 09:53:21 2022
    On 9/8/22 6:59 AM, Peter Nyikos wrote:
    On Tuesday, August 30, 2022 at 10:55:52 PM UTC-4, John Harshman wrote:
    On 8/30/22 2:34 PM, Peter Nyikos wrote:
    On Monday, August 29, 2022 at 4:28:18 PM UTC-4, John Harshman wrote:

    More importantly, the article in question is a legitimate
    contribution to the paleontology literature,

    How do you know? Did you investigate the matrix (or matrices?) that Mortimer and co.
    used to generate their phylogenetic trees in Fig. 17 and Fig. 18?

    No. I just read the paper. Did you?

    I've read enough of it to see two deficiencies and several peculiar
    details.
    Which of those details is relevant to whether the article is a
    legitimate contribution, and if so, why?

    Do you disagree?

    Yes. To begin with, a simple scan shows that they nowhere mention
    which taxon
    they used to root the tree. Very sloppy writing, refereeing, and
    editing is to blame, wouldn't you say?
    Not true. The outgroup to Maniraptoromorpha is stated to be a large
    selection of taxa, with Dilophosaurus as the ultimate outgroup.

    Just above Fig. 17 is the following sentence:

    "As *Ornitholestes* has never been recovered as a tyrannosauroid it
    is considered the most basal well supported member of Maniraptoromorpha
    here."

    And yet, Ornitholestes appears neither in Fig. 17 nor Fig. 18. Their
    trees apparently don't
    show the breadth of Maniraptoromorpha. More sloppiness.
    That's because as stated those figures were pruned to emphasize
    important stuff. For the full tree, see F

    ig. S2.>
    Also, to a layman like me, it seems peculiar that they would use 700
    characters,
    and claim that their choice is better than that of Maryanska et. al.,
    and yet it takes so little change to make some pretty big shifts.
    Not clear what part of that seems peculiar. But the last bit is a
    problem that's common to trees using paleontological data. It results
    from the limited information in skeletal characters and the large amount
    of missing data even for skeletal characters.

    "A Deinonychosauria including troodontids and dromaeosaurids was
    recovered as in many recent analyses. Positioning troodontids closer to
    Aves than dromaeosaurids only requires a single additional step, but non-eumaniraptoran troodontids are less parsimonious at six more steps. Scansoriopterygids form the first branch of Avialae, matching their stratigraphic placement, and constraining them as basal paravians
    instead is only one step longer. Their other suggested position as oviraptorosaurs requires 12 more steps though, so is unlikely. While
    Pedopenna emerges as a scansoriopterygid in the MPTs, one step moves the fragmentary specimen to Archaeopterygidae instead. The juvenile
    Zhongornis branches next, with alternative positions in
    Scansoriopterygidae or Confuciusornithiformes being four and five steps
    longer respectively."

    The placement of the enigmatic Scansoriopterygids has been highly
    varied. Check out:
    https://en.wikipedia.org/wiki/Scansoriopterygidae
    The only tree it shows puts them well outside Avialae, and above the
    tree there is a long
    discussion of numerous other analyses.
    Not sure of your point. Are you claiming that we should judge a
    phylogeny on the basis of whether it's represented in Wikipedia?

    I suggest you compare the Mortimer et.al. matrix with one or more of
    the ones
    among the analyses listed.
    The proper citation, incidentally, is "Hartman et al.". And haven't the
    authors done that comparison already? See Fig. S1. I also note that the legitimacy of all this is enhanced, if any such were necessary, by my observation that the editor was Hans-Dieter Sues.

    I ask again: what, if any of this, is relevant to the question that
    began the post?

    --- SoupGate-Win32 v1.05
    * Origin: fsxNet Usenet Gateway (21:1/5)
  • From John Harshman@21:1/5 to John Harshman on Thu Sep 8 09:54:49 2022
    On 9/8/22 9:53 AM, John Harshman wrote:
    On 9/8/22 9:53 AM, John Harshman wrote:
    On 9/8/22 6:59 AM, Peter Nyikos wrote:
    On Tuesday, August 30, 2022 at 10:55:52 PM UTC-4, John Harshman wrote:
    On 8/30/22 2:34 PM, Peter Nyikos wrote:
    On Monday, August 29, 2022 at 4:28:18 PM UTC-4, John Harshman wrote:

    More importantly, the article in question is a legitimate
    contribution to the paleontology literature,

    How do you know? Did you investigate the matrix (or matrices?) that
    Mortimer and co.
    used to generate their phylogenetic trees in Fig. 17 and Fig. 18?

    No. I just read the paper. Did you?

    I've read enough of it to see two deficiencies and several peculiar
    details.
    Which of those details is relevant to whether the article is a
    legitimate contribution, and if so, why?

    Do you disagree?

    Yes. To begin with, a simple scan shows that they nowhere mention
    which taxon
    they used to root the tree. Very sloppy writing, refereeing, and
    editing is to blame, wouldn't you say?
    Not true. The outgroup to Maniraptoromorpha is stated to be a large
    selection of taxa, with Dilophosaurus as the ultimate outgroup.

    Just above Fig. 17 is the following sentence:

    "As *Ornitholestes* has never been recovered as a tyrannosauroid it
    is considered the most basal well supported member of
    Maniraptoromorpha here."

    And yet, Ornitholestes appears neither in Fig. 17 nor Fig. 18. Their
    trees apparently don't
    show the breadth of Maniraptoromorpha. More sloppiness.
    That's because as stated those figures were pruned to emphasize
    important stuff. For the full tree, see F

    ig. S2.>
    Also, to a layman like me, it seems peculiar that they would use 700
    characters,
    and claim that their choice is better than that of Maryanska et. al.,
    and yet it takes so little change to make some pretty big shifts.
    Not clear what part of that seems peculiar. But the last bit is a
    problem that's common to trees using paleontological data. It results
    from the limited information in skeletal characters and the large
    amount of missing data even for skeletal characters.

    "A Deinonychosauria including troodontids and dromaeosaurids was
    recovered as in many recent analyses. Positioning troodontids closer
    to Aves than dromaeosaurids only requires a single additional step,
    but non-eumaniraptoran troodontids are less parsimonious at six more
    steps. Scansoriopterygids form the first branch of Avialae, matching
    their stratigraphic placement, and constraining them as basal
    paravians instead is only one step longer. Their other suggested
    position as oviraptorosaurs requires 12 more steps though, so is
    unlikely. While Pedopenna emerges as a scansoriopterygid in the MPTs,
    one step moves the fragmentary specimen to Archaeopterygidae instead.
    The juvenile Zhongornis branches next, with alternative positions in
    Scansoriopterygidae or Confuciusornithiformes being four and five
    steps longer respectively."

    The placement of the enigmatic Scansoriopterygids has been highly
    varied. Check out:
    https://en.wikipedia.org/wiki/Scansoriopterygidae
    The only tree it shows puts them well outside Avialae, and above the
    tree there is a long
    discussion of numerous other analyses.
    Not sure of your point. Are you claiming that we should judge a
    phylogeny on the basis of whether it's represented in Wikipedia?

    I suggest you compare the Mortimer et.al. matrix with one or more of
    the ones
    among the analyses listed.
    The proper citation, incidentally, is "Hartman et al.". And haven't
    the authors done that comparison already? See Fig. S1. I also note
    that the legitimacy of all this is enhanced, if any such were
    necessary, by my observation that the editor was Hans-Dieter Sues.

    I ask again: what, if any of this, is relevant to the question that
    began the post?


    Having posting problems. This is a test.

    And another test. Mind you, the first bit was also a real reply, the
    only one I was able to get through.

    --- SoupGate-Win32 v1.05
    * Origin: fsxNet Usenet Gateway (21:1/5)
  • From John Harshman@21:1/5 to John Harshman on Thu Sep 8 12:55:45 2022
    On 9/8/22 9:54 AM, John Harshman wrote:
    On 9/8/22 9:53 AM, John Harshman wrote:
    On 9/8/22 9:53 AM, John Harshman wrote:
    On 9/8/22 6:59 AM, Peter Nyikos wrote:
    On Tuesday, August 30, 2022 at 10:55:52 PM UTC-4, John Harshman wrote: >>>>> On 8/30/22 2:34 PM, Peter Nyikos wrote:
    On Monday, August 29, 2022 at 4:28:18 PM UTC-4, John Harshman wrote: >>>>
    More importantly, the article in question is a legitimate
    contribution to the paleontology literature,

    How do you know? Did you investigate the matrix (or matrices?) that
    Mortimer and co.
    used to generate their phylogenetic trees in Fig. 17 and Fig. 18?

    No. I just read the paper. Did you?

    I've read enough of it to see two deficiencies and several peculiar
    details.
    Which of those details is relevant to whether the article is a
    legitimate contribution, and if so, why?

    Do you disagree?

    Yes. To begin with, a simple scan shows that they nowhere mention
    which taxon
    they used to root the tree. Very sloppy writing, refereeing, and
    editing is to blame, wouldn't you say?
    Not true. The outgroup to Maniraptoromorpha is stated to be a large
    selection of taxa, with Dilophosaurus as the ultimate outgroup.

    Just above Fig. 17 is the following sentence:

    "As *Ornitholestes* has never been recovered as a tyrannosauroid it
    is considered the most basal well supported member of
    Maniraptoromorpha here."

    And yet, Ornitholestes appears neither in Fig. 17 nor Fig. 18. Their
    trees apparently don't
    show the breadth of Maniraptoromorpha. More sloppiness.
    That's because as stated those figures were pruned to emphasize
    important stuff. For the full tree, see F

    ig. S2.>
    Also, to a layman like me, it seems peculiar that they would use 700
    characters,
    and claim that their choice is better than that of Maryanska et. al.,
    and yet it takes so little change to make some pretty big shifts.
    Not clear what part of that seems peculiar. But the last bit is a
    problem that's common to trees using paleontological data. It results
    from the limited information in skeletal characters and the large
    amount of missing data even for skeletal characters.

    "A Deinonychosauria including troodontids and dromaeosaurids was
    recovered as in many recent analyses. Positioning troodontids closer
    to Aves than dromaeosaurids only requires a single additional step,
    but non-eumaniraptoran troodontids are less parsimonious at six more
    steps. Scansoriopterygids form the first branch of Avialae, matching
    their stratigraphic placement, and constraining them as basal
    paravians instead is only one step longer. Their other suggested
    position as oviraptorosaurs requires 12 more steps though, so is
    unlikely. While Pedopenna emerges as a scansoriopterygid in the MPTs,
    one step moves the fragmentary specimen to Archaeopterygidae instead.
    The juvenile Zhongornis branches next, with alternative positions in
    Scansoriopterygidae or Confuciusornithiformes being four and five
    steps longer respectively."

    The placement of the enigmatic Scansoriopterygids has been highly
    varied. Check out:
    https://en.wikipedia.org/wiki/Scansoriopterygidae
    The only tree it shows puts them well outside Avialae, and above the
    tree there is a long
    discussion of numerous other analyses.
    Not sure of your point. Are you claiming that we should judge a
    phylogeny on the basis of whether it's represented in Wikipedia?

    I suggest you compare the Mortimer et.al. matrix with one or more of
    the ones
    among the analyses listed.
    The proper citation, incidentally, is "Hartman et al.". And haven't
    the authors done that comparison already? See Fig. S1. I also note
    that the legitimacy of all this is enhanced, if any such were
    necessary, by my observation that the editor was Hans-Dieter Sues.

    I ask again: what, if any of this, is relevant to the question that
    began the post?


    Having posting problems. This is a test.

    And another test. Mind you, the first bit was also a real reply, the
    only one I was able to get through.

    It's another test.

    --- SoupGate-Win32 v1.05
    * Origin: fsxNet Usenet Gateway (21:1/5)
  • From John Harshman@21:1/5 to John Harshman on Thu Sep 8 13:55:28 2022
    On 9/8/22 9:53 AM, John Harshman wrote:
    On 9/8/22 6:59 AM, Peter Nyikos wrote:
    On Tuesday, August 30, 2022 at 10:55:52 PM UTC-4, John Harshman wrote:
    On 8/30/22 2:34 PM, Peter Nyikos wrote:
    On Monday, August 29, 2022 at 4:28:18 PM UTC-4, John Harshman wrote:

    More importantly, the article in question is a legitimate
    contribution to the paleontology literature,

    How do you know? Did you investigate the matrix (or matrices?) that
    Mortimer and co.
    used to generate their phylogenetic trees in Fig. 17 and Fig. 18?

    No. I just read the paper. Did you?

    I've read enough of it to see two deficiencies and several peculiar
    details.
    Which of those details is relevant to whether the article is a
    legitimate contribution, and if so, why?

    Do you disagree?

    Yes. To begin with, a simple scan shows that they nowhere mention
    which taxon
    they used to root the tree. Very sloppy writing, refereeing, and
    editing is to blame, wouldn't you say?
    Not true. The outgroup to Maniraptoromorpha is stated to be a large
    selection of taxa, with Dilophosaurus as the ultimate outgroup.

    Just above Fig. 17 is the following sentence:

    "As *Ornitholestes* has never been recovered as a tyrannosauroid it
    is considered the most basal well supported member of Maniraptoromorpha here."

    And yet, Ornitholestes appears neither in Fig. 17 nor Fig. 18. Their
    trees apparently don't
    show the breadth of Maniraptoromorpha. More sloppiness.
    That's because as stated those figures were pruned to emphasize
    important stuff. For the full tree, see F

    ig. S2.>
    Also, to a layman like me, it seems peculiar that they would use 700
    characters,
    and claim that their choice is better than that of Maryanska et. al.,
    and yet it takes so little change to make some pretty big shifts.
    Not clear what part of that seems peculiar. But the last bit is a
    problem that's common to trees using paleontological data. It results
    from the limited information in skeletal characters and the large amount
    of missing data even for skeletal characters.

    "A Deinonychosauria including troodontids and dromaeosaurids was
    recovered as in many recent analyses. Positioning troodontids closer to
    Aves than dromaeosaurids only requires a single additional step, but non-eumaniraptoran troodontids are less parsimonious at six more steps. Scansoriopterygids form the first branch of Avialae, matching their stratigraphic placement, and constraining them as basal paravians
    instead is only one step longer. Their other suggested position as oviraptorosaurs requires 12 more steps though, so is unlikely. While Pedopenna emerges as a scansoriopterygid in the MPTs, one step moves the fragmentary specimen to Archaeopterygidae instead. The juvenile
    Zhongornis branches next, with alternative positions in
    Scansoriopterygidae or Confuciusornithiformes being four and five steps longer respectively."

    The placement of the enigmatic Scansoriopterygids has been highly
    varied. Check out:
    https://en.wikipedia.org/wiki/Scansoriopterygidae
    The only tree it shows puts them well outside Avialae, and above the
    tree there is a long
    discussion of numerous other analyses.
    Not sure of your point. Are you claiming that we should judge a
    phylogeny on the basis of whether it's represented in Wikipedia?

    I suggest you compare the Mortimer et.al. matrix with one or more of
    the ones
    among the analyses listed.
    The proper citation, incidentally, is "Hartman et al.". And haven't the authors done that comparison already? See Fig. S1. I also note that the legitimacy of all this is enhanced, if any such were necessary, by my observation that the editor was Hans-Dieter Sues.

    I ask again: what, if any of this, is relevant to the question that
    began the post?



    On 9/8/22 6:59 AM, Peter Nyikos wrote:
    On Tuesday, August 30, 2022 at 10:55:52 PM UTC-4, John Harshman wrote:
    On 8/30/22 2:34 PM, Peter Nyikos wrote:
    On Monday, August 29, 2022 at 4:28:18 PM UTC-4, John Harshman wrote:

    More importantly, the article in question is a legitimate
    contribution to the paleontology literature,

    How do you know? Did you investigate the matrix (or matrices?) that Mortimer and co.
    used to generate their phylogenetic trees in Fig. 17 and Fig. 18?

    No. I just read the paper. Did you?

    I've read enough of it to see two deficiencies and several peculiar
    details.
    Which of those details is relevant to whether the article is a
    legitimate contribution, and if so, why?

    Do you disagree?

    Yes. To begin with, a simple scan shows that they nowhere mention
    which taxon
    they used to root the tree. Very sloppy writing, refereeing, and
    editing is to blame, wouldn't you say?
    Not true. The outgroup to Maniraptoromorpha is stated to be a large
    selection of taxa, with Dilophosaurus as the ultimate outgroup.

    Just above Fig. 17 is the following sentence:

    "As *Ornitholestes* has never been recovered as a tyrannosauroid it
    is considered the most basal well supported member of Maniraptoromorpha
    here."

    And yet, Ornitholestes appears neither in Fig. 17 nor Fig. 18. Their
    trees apparently don't
    show the breadth of Maniraptoromorpha. More sloppiness.
    That's because as stated those figures were pruned to emphasize
    important stuff. For the full tree, see F

    ig. S2.>
    Also, to a layman like me, it seems peculiar that they would use 700
    characters,
    and claim that their choice is better than that of Maryanska et. al.,
    and yet it takes so little change to make some pretty big shifts.
    Not clear what part of that seems peculiar. But the last bit is a
    problem that's common to trees using paleontological data. It results
    from the limited information in skeletal characters and the large amount
    of missing data even for skeletal characters.

    "A Deinonychosauria including troodontids and dromaeosaurids was
    recovered as in many recent analyses. Positioning troodontids closer to
    Aves than dromaeosaurids only requires a single additional step, but non-eumaniraptoran troodontids are less parsimonious at six more steps. Scansoriopterygids form the first branch of Avialae, matching their stratigraphic placement, and constraining them as basal paravians
    instead is only one step longer. Their other suggested position as oviraptorosaurs requires 12 more steps though, so is unlikely. While
    Pedopenna emerges as a scansoriopterygid in the MPTs, one step moves the fragmentary specimen to Archaeopterygidae instead. The juvenile
    Zhongornis branches next, with alternative positions in
    Scansoriopterygidae or Confuciusornithiformes being four and five steps
    longer respectively."

    The placement of the enigmatic Scansoriopterygids has been highly
    varied. Check out:
    https://en.wikipedia.org/wiki/Scansoriopterygidae
    The only tree it shows puts them well outside Avialae, and above the
    tree there is a long
    discussion of numerous other analyses.
    Not sure of your point. Are you claiming that we should judge a
    phylogeny on the basis of whether it's represented in Wikipedia?

    I suggest you compare the Mortimer et.al. matrix with one or more of
    the ones
    among the analyses listed.
    The proper citation, incidentally, is "Hartman et al.". And haven't the
    authors done that comparison already? See Fig. S1. I also note that the legitimacy of all this is enhanced, if any such were necessary, by my observation that the editor was Hans-Dieter Sues.

    I ask again: what, if any of this, is relevant to the question that
    began the post?

    --- SoupGate-Win32 v1.05
    * Origin: fsxNet Usenet Gateway (21:1/5)
  • From John Harshman@21:1/5 to John Harshman on Thu Sep 8 13:54:57 2022
    On 9/8/22 9:53 AM, John Harshman wrote:
    On 9/8/22 6:59 AM, Peter Nyikos wrote:
    On Tuesday, August 30, 2022 at 10:55:52 PM UTC-4, John Harshman wrote:
    On 8/30/22 2:34 PM, Peter Nyikos wrote:
    On Monday, August 29, 2022 at 4:28:18 PM UTC-4, John Harshman wrote:

    More importantly, the article in question is a legitimate
    contribution to the paleontology literature,

    How do you know? Did you investigate the matrix (or matrices?) that
    Mortimer and co.
    used to generate their phylogenetic trees in Fig. 17 and Fig. 18?

    No. I just read the paper. Did you?

    I've read enough of it to see two deficiencies and several peculiar
    details.
    Which of those details is relevant to whether the article is a
    legitimate contribution, and if so, why?

    Do you disagree?

    Yes. To begin with, a simple scan shows that they nowhere mention
    which taxon
    they used to root the tree. Very sloppy writing, refereeing, and
    editing is to blame, wouldn't you say?
    Not true. The outgroup to Maniraptoromorpha is stated to be a large
    selection of taxa, with Dilophosaurus as the ultimate outgroup.

    Just above Fig. 17 is the following sentence:

    "As *Ornitholestes* has never been recovered as a tyrannosauroid it
    is considered the most basal well supported member of Maniraptoromorpha here."

    And yet, Ornitholestes appears neither in Fig. 17 nor Fig. 18. Their
    trees apparently don't
    show the breadth of Maniraptoromorpha. More sloppiness.
    That's because as stated those figures were pruned to emphasize
    important stuff. For the full tree, see F

    ig. S2.>
    Also, to a layman like me, it seems peculiar that they would use 700
    characters,
    and claim that their choice is better than that of Maryanska et. al.,
    and yet it takes so little change to make some pretty big shifts.
    Not clear what part of that seems peculiar. But the last bit is a
    problem that's common to trees using paleontological data. It results
    from the limited information in skeletal characters and the large amount
    of missing data even for skeletal characters.

    "A Deinonychosauria including troodontids and dromaeosaurids was
    recovered as in many recent analyses. Positioning troodontids closer to
    Aves than dromaeosaurids only requires a single additional step, but non-eumaniraptoran troodontids are less parsimonious at six more steps. Scansoriopterygids form the first branch of Avialae, matching their stratigraphic placement, and constraining them as basal paravians
    instead is only one step longer. Their other suggested position as oviraptorosaurs requires 12 more steps though, so is unlikely. While Pedopenna emerges as a scansoriopterygid in the MPTs, one step moves the fragmentary specimen to Archaeopterygidae instead. The juvenile
    Zhongornis branches next, with alternative positions in
    Scansoriopterygidae or Confuciusornithiformes being four and five steps longer respectively."

    The placement of the enigmatic Scansoriopterygids has been highly
    varied. Check out:
    https://en.wikipedia.org/wiki/Scansoriopterygidae
    The only tree it shows puts them well outside Avialae, and above the
    tree there is a long
    discussion of numerous other analyses.
    Not sure of your point. Are you claiming that we should judge a
    phylogeny on the basis of whether it's represented in Wikipedia?

    I suggest you compare the Mortimer et.al. matrix with one or more of
    the ones
    among the analyses listed.
    The proper citation, incidentally, is "Hartman et al.". And haven't the authors done that comparison already? See Fig. S1. I also note that the legitimacy of all this is enhanced, if any such were necessary, by my observation that the editor was Hans-Dieter Sues.

    I ask again: what, if any of this, is relevant to the question that
    began the post?


    Yes, more testing.

    --- SoupGate-Win32 v1.05
    * Origin: fsxNet Usenet Gateway (21:1/5)
  • From Peter Nyikos@21:1/5 to John Harshman on Mon Sep 12 19:34:46 2022
    On Thursday, September 8, 2022 at 4:55:34 PM UTC-4, John Harshman wrote:
    On 9/8/22 9:53 AM, John Harshman wrote:
    On 9/8/22 6:59 AM, Peter Nyikos wrote:
    On Tuesday, August 30, 2022 at 10:55:52 PM UTC-4, John Harshman wrote:
    On 8/30/22 2:34 PM, Peter Nyikos wrote:
    On Monday, August 29, 2022 at 4:28:18 PM UTC-4, John Harshman wrote:

    More importantly, the article in question is a legitimate
    contribution to the paleontology literature,

    How do you know? Did you investigate the matrix (or matrices?) that
    Mortimer and co.
    used to generate their phylogenetic trees in Fig. 17 and Fig. 18?

    No. I just read the paper. Did you?

    I've read enough of it to see two deficiencies and several peculiar
    details.
    Which of those details is relevant to whether the article is a
    legitimate contribution, and if so, why?

    Do you disagree?

    Yes. To begin with, a simple scan shows that they nowhere mention
    which taxon
    they used to root the tree. Very sloppy writing, refereeing, and
    editing is to blame, wouldn't you say?
    Not true. The outgroup to Maniraptoromorpha is stated to be a large selection of taxa, with Dilophosaurus as the ultimate outgroup.

    Just above Fig. 17 is the following sentence:

    "As *Ornitholestes* has never been recovered as a tyrannosauroid it
    is considered the most basal well supported member of Maniraptoromorpha here."

    And yet, Ornitholestes appears neither in Fig. 17 nor Fig. 18. Their
    trees apparently don't
    show the breadth of Maniraptoromorpha. More sloppiness.
    That's because as stated those figures were pruned to emphasize
    important stuff. For the full tree, see F

    ig. S2.>
    Also, to a layman like me, it seems peculiar that they would use 700
    characters,
    and claim that their choice is better than that of Maryanska et. al.,
    and yet it takes so little change to make some pretty big shifts.
    Not clear what part of that seems peculiar. But the last bit is a
    problem that's common to trees using paleontological data. It results
    from the limited information in skeletal characters and the large amount
    of missing data even for skeletal characters.

    "A Deinonychosauria including troodontids and dromaeosaurids was
    recovered as in many recent analyses. Positioning troodontids closer to Aves than dromaeosaurids only requires a single additional step, but non-eumaniraptoran troodontids are less parsimonious at six more steps. Scansoriopterygids form the first branch of Avialae, matching their stratigraphic placement, and constraining them as basal paravians
    instead is only one step longer. Their other suggested position as oviraptorosaurs requires 12 more steps though, so is unlikely. While Pedopenna emerges as a scansoriopterygid in the MPTs, one step moves the fragmentary specimen to Archaeopterygidae instead. The juvenile
    Zhongornis branches next, with alternative positions in
    Scansoriopterygidae or Confuciusornithiformes being four and five steps longer respectively."

    The placement of the enigmatic Scansoriopterygids has been highly
    varied. Check out:
    https://en.wikipedia.org/wiki/Scansoriopterygidae
    The only tree it shows puts them well outside Avialae, and above the
    tree there is a long
    discussion of numerous other analyses.
    Not sure of your point. Are you claiming that we should judge a
    phylogeny on the basis of whether it's represented in Wikipedia?

    I suggest you compare the Mortimer et.al. matrix with one or more of
    the ones
    among the analyses listed.
    The proper citation, incidentally, is "Hartman et al.". And haven't the authors done that comparison already? See Fig. S1. I also note that the legitimacy of all this is enhanced, if any such were necessary, by my observation that the editor was Hans-Dieter Sues.

    I ask again: what, if any of this, is relevant to the question that
    began the post?



    On 9/8/22 6:59 AM, Peter Nyikos wrote:
    On Tuesday, August 30, 2022 at 10:55:52 PM UTC-4, John Harshman wrote:
    On 8/30/22 2:34 PM, Peter Nyikos wrote:
    On Monday, August 29, 2022 at 4:28:18 PM UTC-4, John Harshman wrote:

    More importantly, the article in question is a legitimate
    contribution to the paleontology literature,

    How do you know? Did you investigate the matrix (or matrices?) that Mortimer and co.
    used to generate their phylogenetic trees in Fig. 17 and Fig. 18?

    No. I just read the paper. Did you?

    I've read enough of it to see two deficiencies and several peculiar
    details.
    Which of those details is relevant to whether the article is a
    legitimate contribution, and if so, why?

    Do you disagree?

    Yes. To begin with, a simple scan shows that they nowhere mention
    which taxon
    they used to root the tree. Very sloppy writing, refereeing, and
    editing is to blame, wouldn't you say?
    Not true. The outgroup to Maniraptoromorpha is stated to be a large
    selection of taxa, with Dilophosaurus as the ultimate outgroup.

    Just above Fig. 17 is the following sentence:

    "As *Ornitholestes* has never been recovered as a tyrannosauroid it
    is considered the most basal well supported member of Maniraptoromorpha here."

    And yet, Ornitholestes appears neither in Fig. 17 nor Fig. 18. Their
    trees apparently don't
    show the breadth of Maniraptoromorpha. More sloppiness.
    That's because as stated those figures were pruned to emphasize
    important stuff. For the full tree, see F

    ig. S2.>
    Also, to a layman like me, it seems peculiar that they would use 700
    characters,
    and claim that their choice is better than that of Maryanska et. al.,
    and yet it takes so little change to make some pretty big shifts.
    Not clear what part of that seems peculiar. But the last bit is a
    problem that's common to trees using paleontological data. It results
    from the limited information in skeletal characters and the large amount
    of missing data even for skeletal characters.

    "A Deinonychosauria including troodontids and dromaeosaurids was
    recovered as in many recent analyses. Positioning troodontids closer to
    Aves than dromaeosaurids only requires a single additional step, but non-eumaniraptoran troodontids are less parsimonious at six more steps. Scansoriopterygids form the first branch of Avialae, matching their stratigraphic placement, and constraining them as basal paravians
    instead is only one step longer. Their other suggested position as oviraptorosaurs requires 12 more steps though, so is unlikely. While Pedopenna emerges as a scansoriopterygid in the MPTs, one step moves the fragmentary specimen to Archaeopterygidae instead. The juvenile
    Zhongornis branches next, with alternative positions in
    Scansoriopterygidae or Confuciusornithiformes being four and five steps longer respectively."

    The placement of the enigmatic Scansoriopterygids has been highly
    varied. Check out:
    https://en.wikipedia.org/wiki/Scansoriopterygidae
    The only tree it shows puts them well outside Avialae, and above the
    tree there is a long
    discussion of numerous other analyses.
    Not sure of your point. Are you claiming that we should judge a
    phylogeny on the basis of whether it's represented in Wikipedia?

    I suggest you compare the Mortimer et.al. matrix with one or more of
    the ones
    among the analyses listed.
    The proper citation, incidentally, is "Hartman et al.". And haven't the authors done that comparison already? See Fig. S1. I also note that the legitimacy of all this is enhanced, if any such were necessary, by my observation that the editor was Hans-Dieter Sues.

    I ask again: what, if any of this, is relevant to the question that
    began the post?
    '
    This is the fifth of five tests that you did in replies to your OP or replies to replies....
    Six posts on the 8th of September.
    Couldn't you have done any of them on the original thread?
    That's where I've been looking for a reply for the last five days.
    Or you could have told me about your tests in the "False Dichotomy..."
    thread where we communicated until well into Friday.


    Peter Nyikos

    PS Memo to self: look at the table of contents for s.b.p. three days out of every five.

    --- SoupGate-Win32 v1.05
    * Origin: fsxNet Usenet Gateway (21:1/5)
  • From John Harshman@21:1/5 to Peter Nyikos on Tue Sep 13 06:15:51 2022
    On 9/12/22 7:34 PM, Peter Nyikos wrote:
    On Thursday, September 8, 2022 at 4:55:34 PM UTC-4, John Harshman wrote:
    On 9/8/22 9:53 AM, John Harshman wrote:
    On 9/8/22 6:59 AM, Peter Nyikos wrote:
    On Tuesday, August 30, 2022 at 10:55:52 PM UTC-4, John Harshman wrote: >>>>> On 8/30/22 2:34 PM, Peter Nyikos wrote:
    On Monday, August 29, 2022 at 4:28:18 PM UTC-4, John Harshman wrote: >>>>
    More importantly, the article in question is a legitimate
    contribution to the paleontology literature,

    How do you know? Did you investigate the matrix (or matrices?) that
    Mortimer and co.
    used to generate their phylogenetic trees in Fig. 17 and Fig. 18?

    No. I just read the paper. Did you?

    I've read enough of it to see two deficiencies and several peculiar
    details.
    Which of those details is relevant to whether the article is a
    legitimate contribution, and if so, why?

    Do you disagree?

    Yes. To begin with, a simple scan shows that they nowhere mention
    which taxon
    they used to root the tree. Very sloppy writing, refereeing, and
    editing is to blame, wouldn't you say?
    Not true. The outgroup to Maniraptoromorpha is stated to be a large
    selection of taxa, with Dilophosaurus as the ultimate outgroup.

    Just above Fig. 17 is the following sentence:

    "As *Ornitholestes* has never been recovered as a tyrannosauroid it
    is considered the most basal well supported member of Maniraptoromorpha
    here."

    And yet, Ornitholestes appears neither in Fig. 17 nor Fig. 18. Their
    trees apparently don't
    show the breadth of Maniraptoromorpha. More sloppiness.
    That's because as stated those figures were pruned to emphasize
    important stuff. For the full tree, see F

    ig. S2.>
    Also, to a layman like me, it seems peculiar that they would use 700
    characters,
    and claim that their choice is better than that of Maryanska et. al.,
    and yet it takes so little change to make some pretty big shifts.
    Not clear what part of that seems peculiar. But the last bit is a
    problem that's common to trees using paleontological data. It results
    from the limited information in skeletal characters and the large amount >>> of missing data even for skeletal characters.

    "A Deinonychosauria including troodontids and dromaeosaurids was
    recovered as in many recent analyses. Positioning troodontids closer to
    Aves than dromaeosaurids only requires a single additional step, but
    non-eumaniraptoran troodontids are less parsimonious at six more steps.
    Scansoriopterygids form the first branch of Avialae, matching their
    stratigraphic placement, and constraining them as basal paravians
    instead is only one step longer. Their other suggested position as
    oviraptorosaurs requires 12 more steps though, so is unlikely. While
    Pedopenna emerges as a scansoriopterygid in the MPTs, one step moves the >>> fragmentary specimen to Archaeopterygidae instead. The juvenile
    Zhongornis branches next, with alternative positions in
    Scansoriopterygidae or Confuciusornithiformes being four and five steps
    longer respectively."

    The placement of the enigmatic Scansoriopterygids has been highly
    varied. Check out:
    https://en.wikipedia.org/wiki/Scansoriopterygidae
    The only tree it shows puts them well outside Avialae, and above the
    tree there is a long
    discussion of numerous other analyses.
    Not sure of your point. Are you claiming that we should judge a
    phylogeny on the basis of whether it's represented in Wikipedia?

    I suggest you compare the Mortimer et.al. matrix with one or more of
    the ones
    among the analyses listed.
    The proper citation, incidentally, is "Hartman et al.". And haven't the
    authors done that comparison already? See Fig. S1. I also note that the
    legitimacy of all this is enhanced, if any such were necessary, by my
    observation that the editor was Hans-Dieter Sues.

    I ask again: what, if any of this, is relevant to the question that
    began the post?



    On 9/8/22 6:59 AM, Peter Nyikos wrote:
    On Tuesday, August 30, 2022 at 10:55:52 PM UTC-4, John Harshman wrote:
    On 8/30/22 2:34 PM, Peter Nyikos wrote:
    On Monday, August 29, 2022 at 4:28:18 PM UTC-4, John Harshman wrote:

    More importantly, the article in question is a legitimate
    contribution to the paleontology literature,

    How do you know? Did you investigate the matrix (or matrices?) that
    Mortimer and co.
    used to generate their phylogenetic trees in Fig. 17 and Fig. 18?

    No. I just read the paper. Did you?

    I've read enough of it to see two deficiencies and several peculiar
    details.
    Which of those details is relevant to whether the article is a
    legitimate contribution, and if so, why?

    Do you disagree?

    Yes. To begin with, a simple scan shows that they nowhere mention
    which taxon
    they used to root the tree. Very sloppy writing, refereeing, and
    editing is to blame, wouldn't you say?
    Not true. The outgroup to Maniraptoromorpha is stated to be a large
    selection of taxa, with Dilophosaurus as the ultimate outgroup.

    Just above Fig. 17 is the following sentence:

    "As *Ornitholestes* has never been recovered as a tyrannosauroid it
    is considered the most basal well supported member of Maniraptoromorpha
    here."

    And yet, Ornitholestes appears neither in Fig. 17 nor Fig. 18. Their
    trees apparently don't
    show the breadth of Maniraptoromorpha. More sloppiness.
    That's because as stated those figures were pruned to emphasize
    important stuff. For the full tree, see F

    ig. S2.>
    Also, to a layman like me, it seems peculiar that they would use 700
    characters,
    and claim that their choice is better than that of Maryanska et. al.,
    and yet it takes so little change to make some pretty big shifts.
    Not clear what part of that seems peculiar. But the last bit is a
    problem that's common to trees using paleontological data. It results
    from the limited information in skeletal characters and the large amount
    of missing data even for skeletal characters.

    "A Deinonychosauria including troodontids and dromaeosaurids was
    recovered as in many recent analyses. Positioning troodontids closer to
    Aves than dromaeosaurids only requires a single additional step, but
    non-eumaniraptoran troodontids are less parsimonious at six more steps.
    Scansoriopterygids form the first branch of Avialae, matching their
    stratigraphic placement, and constraining them as basal paravians
    instead is only one step longer. Their other suggested position as
    oviraptorosaurs requires 12 more steps though, so is unlikely. While
    Pedopenna emerges as a scansoriopterygid in the MPTs, one step moves the
    fragmentary specimen to Archaeopterygidae instead. The juvenile
    Zhongornis branches next, with alternative positions in
    Scansoriopterygidae or Confuciusornithiformes being four and five steps
    longer respectively."

    The placement of the enigmatic Scansoriopterygids has been highly
    varied. Check out:
    https://en.wikipedia.org/wiki/Scansoriopterygidae
    The only tree it shows puts them well outside Avialae, and above the
    tree there is a long
    discussion of numerous other analyses.
    Not sure of your point. Are you claiming that we should judge a
    phylogeny on the basis of whether it's represented in Wikipedia?

    I suggest you compare the Mortimer et.al. matrix with one or more of
    the ones
    among the analyses listed.
    The proper citation, incidentally, is "Hartman et al.". And haven't the
    authors done that comparison already? See Fig. S1. I also note that the
    legitimacy of all this is enhanced, if any such were necessary, by my
    observation that the editor was Hans-Dieter Sues.

    I ask again: what, if any of this, is relevant to the question that
    began the post?
    '
    This is the fifth of five tests that you did in replies to your OP or replies to replies....
    Six posts on the 8th of September.
    Couldn't you have done any of them on the original thread?
    That's where I've been looking for a reply for the last five days.
    Or you could have told me about your tests in the "False Dichotomy..."
    thread where we communicated until well into Friday.

    Having trouble with usenet these days. Posts never load, posts
    disappear. You see only the successful tests. I'm lucky that reply
    turned up anywhere.

    --- SoupGate-Win32 v1.05
    * Origin: fsxNet Usenet Gateway (21:1/5)
  • From John Harshman@21:1/5 to John Harshman on Wed Sep 14 13:38:16 2022
    On 9/13/22 6:15 AM, John Harshman wrote:
    On 9/12/22 7:34 PM, Peter Nyikos wrote:
    On Thursday, September 8, 2022 at 4:55:34 PM UTC-4, John Harshman wrote:
    On 9/8/22 9:53 AM, John Harshman wrote:
    On 9/8/22 6:59 AM, Peter Nyikos wrote:
    On Tuesday, August 30, 2022 at 10:55:52 PM UTC-4, John Harshman wrote: >>>>>> On 8/30/22 2:34 PM, Peter Nyikos wrote:
    On Monday, August 29, 2022 at 4:28:18 PM UTC-4, John Harshman wrote: >>>>>
    More importantly, the article in question is a legitimate
    contribution to the paleontology literature,

    How do you know? Did you investigate the matrix (or matrices?) that >>>> Mortimer and co.
    used to generate their phylogenetic trees in Fig. 17 and Fig. 18?

    No. I just read the paper. Did you?

    I've read enough of it to see two deficiencies and several peculiar
    details.
    Which of those details is relevant to whether the article is a
    legitimate contribution, and if so, why?

    Do you disagree?

    Yes. To begin with, a simple scan shows that they nowhere mention
    which taxon
    they used to root the tree. Very sloppy writing, refereeing, and
    editing is to blame, wouldn't you say?
    Not true. The outgroup to Maniraptoromorpha is stated to be a large
    selection of taxa, with Dilophosaurus as the ultimate outgroup.

    Just above Fig. 17 is the following sentence:

    "As *Ornitholestes* has never been recovered as a tyrannosauroid it
    is considered the most basal well supported member of Maniraptoromorpha >>>> here."

    And yet, Ornitholestes appears neither in Fig. 17 nor Fig. 18. Their
    trees apparently don't
    show the breadth of Maniraptoromorpha. More sloppiness.
    That's because as stated those figures were pruned to emphasize
    important stuff. For the full tree, see F

    ig. S2.>
    Also, to a layman like me, it seems peculiar that they would use 700
    characters,
    and claim that their choice is better than that of Maryanska et. al., >>>>> and yet it takes so little change to make some pretty big shifts.
    Not clear what part of that seems peculiar. But the last bit is a
    problem that's common to trees using paleontological data. It results
    from the limited information in skeletal characters and the large
    amount
    of missing data even for skeletal characters.

    "A Deinonychosauria including troodontids and dromaeosaurids was
    recovered as in many recent analyses. Positioning troodontids closer to >>>> Aves than dromaeosaurids only requires a single additional step, but
    non-eumaniraptoran troodontids are less parsimonious at six more steps. >>>> Scansoriopterygids form the first branch of Avialae, matching their
    stratigraphic placement, and constraining them as basal paravians
    instead is only one step longer. Their other suggested position as
    oviraptorosaurs requires 12 more steps though, so is unlikely. While
    Pedopenna emerges as a scansoriopterygid in the MPTs, one step moves
    the
    fragmentary specimen to Archaeopterygidae instead. The juvenile
    Zhongornis branches next, with alternative positions in
    Scansoriopterygidae or Confuciusornithiformes being four and five steps >>>> longer respectively."

    The placement of the enigmatic Scansoriopterygids has been highly
    varied. Check out:
    https://en.wikipedia.org/wiki/Scansoriopterygidae
    The only tree it shows puts them well outside Avialae, and above the
    tree there is a long
    discussion of numerous other analyses.
    Not sure of your point. Are you claiming that we should judge a
    phylogeny on the basis of whether it's represented in Wikipedia?

    I suggest you compare the Mortimer et.al. matrix with one or more of
    the ones
    among the analyses listed.
    The proper citation, incidentally, is "Hartman et al.". And haven't the >>>> authors done that comparison already? See Fig. S1. I also note that the >>>> legitimacy of all this is enhanced, if any such were necessary, by my
    observation that the editor was Hans-Dieter Sues.

    I ask again: what, if any of this, is relevant to the question that
    began the post?



    On 9/8/22 6:59 AM, Peter Nyikos wrote:
    On Tuesday, August 30, 2022 at 10:55:52 PM UTC-4, John Harshman wrote: >>>>> On 8/30/22 2:34 PM, Peter Nyikos wrote:
    On Monday, August 29, 2022 at 4:28:18 PM UTC-4, John Harshman wrote: >>>>
    More importantly, the article in question is a legitimate
    contribution to the paleontology literature,

    How do you know? Did you investigate the matrix (or matrices?) that
    Mortimer and co.
    used to generate their phylogenetic trees in Fig. 17 and Fig. 18?

    No. I just read the paper. Did you?

    I've read enough of it to see two deficiencies and several peculiar
    details.
    Which of those details is relevant to whether the article is a
    legitimate contribution, and if so, why?

    Do you disagree?

    Yes. To begin with, a simple scan shows that they nowhere mention
    which taxon
    they used to root the tree. Very sloppy writing, refereeing, and
    editing is to blame, wouldn't you say?
    Not true. The outgroup to Maniraptoromorpha is stated to be a large
    selection of taxa, with Dilophosaurus as the ultimate outgroup.

    Just above Fig. 17 is the following sentence:

    "As *Ornitholestes* has never been recovered as a tyrannosauroid it
    is considered the most basal well supported member of Maniraptoromorpha
    here."

    And yet, Ornitholestes appears neither in Fig. 17 nor Fig. 18. Their
    trees apparently don't
    show the breadth of Maniraptoromorpha. More sloppiness.
    That's because as stated those figures were pruned to emphasize
    important stuff. For the full tree, see F

    ig. S2.>
    Also, to a layman like me, it seems peculiar that they would use 700
    characters,
    and claim that their choice is better than that of Maryanska et. al.,
    and yet it takes so little change to make some pretty big shifts.
    Not clear what part of that seems peculiar. But the last bit is a
    problem that's common to trees using paleontological data. It results
    from the limited information in skeletal characters and the large amount >>> of missing data even for skeletal characters.

    "A Deinonychosauria including troodontids and dromaeosaurids was
    recovered as in many recent analyses. Positioning troodontids closer to
    Aves than dromaeosaurids only requires a single additional step, but
    non-eumaniraptoran troodontids are less parsimonious at six more steps.
    Scansoriopterygids form the first branch of Avialae, matching their
    stratigraphic placement, and constraining them as basal paravians
    instead is only one step longer. Their other suggested position as
    oviraptorosaurs requires 12 more steps though, so is unlikely. While
    Pedopenna emerges as a scansoriopterygid in the MPTs, one step moves the >>> fragmentary specimen to Archaeopterygidae instead. The juvenile
    Zhongornis branches next, with alternative positions in
    Scansoriopterygidae or Confuciusornithiformes being four and five steps
    longer respectively."

    The placement of the enigmatic Scansoriopterygids has been highly
    varied. Check out:
    https://en.wikipedia.org/wiki/Scansoriopterygidae
    The only tree it shows puts them well outside Avialae, and above the
    tree there is a long
    discussion of numerous other analyses.
    Not sure of your point. Are you claiming that we should judge a
    phylogeny on the basis of whether it's represented in Wikipedia?

    I suggest you compare the Mortimer et.al. matrix with one or more of
    the ones
    among the analyses listed.
    The proper citation, incidentally, is "Hartman et al.". And haven't the
    authors done that comparison already? See Fig. S1. I also note that the
    legitimacy of all this is enhanced, if any such were necessary, by my
    observation that the editor was Hans-Dieter Sues.

    I ask again: what, if any of this, is relevant to the question that
    began the post?
    '
    This is the fifth  of five tests that you did in replies to your OP or
    replies to replies....
    Six posts on the 8th of September.
    Couldn't you have done any of them on the original thread?
    That's where I've been looking for a reply for the last five days.
    Or you could have told me about your tests in the "False Dichotomy..."
    thread where we communicated until well into Friday.

    Having trouble with usenet these days. Posts never load, posts
    disappear. You see only the successful tests. I'm lucky that reply
    turned up anywhere.


    This is yet another test.

    --- SoupGate-Win32 v1.05
    * Origin: fsxNet Usenet Gateway (21:1/5)
  • From Peter Nyikos@21:1/5 to John Harshman on Wed Sep 14 17:57:17 2022
    On Wednesday, September 14, 2022 at 4:38:22 PM UTC-4, John Harshman wrote:
    On 9/13/22 6:15 AM, John Harshman wrote:
    On 9/12/22 7:34 PM, Peter Nyikos wrote:
    On Thursday, September 8, 2022 at 4:55:34 PM UTC-4, John Harshman wrote: >>> On 9/8/22 9:53 AM, John Harshman wrote:
    On 9/8/22 6:59 AM, Peter Nyikos wrote:
    On Tuesday, August 30, 2022 at 10:55:52 PM UTC-4, John Harshman wrote: >>>>>> On 8/30/22 2:34 PM, Peter Nyikos wrote:
    On Monday, August 29, 2022 at 4:28:18 PM UTC-4, John Harshman wrote: >>>>>
    More importantly, the article in question is a legitimate
    contribution to the paleontology literature,

    How do you know? Did you investigate the matrix (or matrices?) that >>>> Mortimer and co.
    used to generate their phylogenetic trees in Fig. 17 and Fig. 18? >>>>>
    No. I just read the paper. Did you?

    I've read enough of it to see two deficiencies and several peculiar >>>> details.
    Which of those details is relevant to whether the article is a
    legitimate contribution, and if so, why?

    Do you disagree?

    Yes. To begin with, a simple scan shows that they nowhere mention
    which taxon
    they used to root the tree. Very sloppy writing, refereeing, and
    editing is to blame, wouldn't you say?
    Not true. The outgroup to Maniraptoromorpha is stated to be a large
    selection of taxa, with Dilophosaurus as the ultimate outgroup.

    Just above Fig. 17 is the following sentence:

    "As *Ornitholestes* has never been recovered as a tyrannosauroid it >>>> is considered the most basal well supported member of Maniraptoromorpha >>>> here."

    And yet, Ornitholestes appears neither in Fig. 17 nor Fig. 18. Their >>>> trees apparently don't
    show the breadth of Maniraptoromorpha. More sloppiness.
    That's because as stated those figures were pruned to emphasize
    important stuff. For the full tree, see F

    ig. S2.>
    Also, to a layman like me, it seems peculiar that they would use 700 >>>> characters,
    and claim that their choice is better than that of Maryanska et. al., >>>>> and yet it takes so little change to make some pretty big shifts.
    Not clear what part of that seems peculiar. But the last bit is a
    problem that's common to trees using paleontological data. It results >>>> from the limited information in skeletal characters and the large
    amount
    of missing data even for skeletal characters.

    "A Deinonychosauria including troodontids and dromaeosaurids was
    recovered as in many recent analyses. Positioning troodontids closer to >>>> Aves than dromaeosaurids only requires a single additional step, but >>>> non-eumaniraptoran troodontids are less parsimonious at six more steps. >>>> Scansoriopterygids form the first branch of Avialae, matching their
    stratigraphic placement, and constraining them as basal paravians
    instead is only one step longer. Their other suggested position as
    oviraptorosaurs requires 12 more steps though, so is unlikely. While >>>> Pedopenna emerges as a scansoriopterygid in the MPTs, one step moves >>>> the
    fragmentary specimen to Archaeopterygidae instead. The juvenile
    Zhongornis branches next, with alternative positions in
    Scansoriopterygidae or Confuciusornithiformes being four and five steps >>>> longer respectively."

    The placement of the enigmatic Scansoriopterygids has been highly
    varied. Check out:
    https://en.wikipedia.org/wiki/Scansoriopterygidae
    The only tree it shows puts them well outside Avialae, and above the >>>> tree there is a long
    discussion of numerous other analyses.
    Not sure of your point. Are you claiming that we should judge a
    phylogeny on the basis of whether it's represented in Wikipedia?

    I suggest you compare the Mortimer et.al. matrix with one or more of >>>> the ones
    among the analyses listed.
    The proper citation, incidentally, is "Hartman et al.". And haven't the >>>> authors done that comparison already? See Fig. S1. I also note that the >>>> legitimacy of all this is enhanced, if any such were necessary, by my >>>> observation that the editor was Hans-Dieter Sues.

    I ask again: what, if any of this, is relevant to the question that
    began the post?



    On 9/8/22 6:59 AM, Peter Nyikos wrote:
    On Tuesday, August 30, 2022 at 10:55:52 PM UTC-4, John Harshman wrote: >>>>> On 8/30/22 2:34 PM, Peter Nyikos wrote:
    On Monday, August 29, 2022 at 4:28:18 PM UTC-4, John Harshman wrote: >>>>
    More importantly, the article in question is a legitimate
    contribution to the paleontology literature,

    How do you know? Did you investigate the matrix (or matrices?) that >>> Mortimer and co.
    used to generate their phylogenetic trees in Fig. 17 and Fig. 18?

    No. I just read the paper. Did you?

    I've read enough of it to see two deficiencies and several peculiar
    details.
    Which of those details is relevant to whether the article is a
    legitimate contribution, and if so, why?

    Do you disagree?

    Yes. To begin with, a simple scan shows that they nowhere mention
    which taxon
    they used to root the tree. Very sloppy writing, refereeing, and
    editing is to blame, wouldn't you say?
    Not true. The outgroup to Maniraptoromorpha is stated to be a large
    selection of taxa, with Dilophosaurus as the ultimate outgroup.

    Just above Fig. 17 is the following sentence:

    "As *Ornitholestes* has never been recovered as a tyrannosauroid it
    is considered the most basal well supported member of Maniraptoromorpha >>> here."

    And yet, Ornitholestes appears neither in Fig. 17 nor Fig. 18. Their
    trees apparently don't
    show the breadth of Maniraptoromorpha. More sloppiness.
    That's because as stated those figures were pruned to emphasize
    important stuff. For the full tree, see F

    ig. S2.>
    Also, to a layman like me, it seems peculiar that they would use 700
    characters,
    and claim that their choice is better than that of Maryanska et. al., >>>> and yet it takes so little change to make some pretty big shifts.
    Not clear what part of that seems peculiar. But the last bit is a
    problem that's common to trees using paleontological data. It results
    from the limited information in skeletal characters and the large amount >>> of missing data even for skeletal characters.

    "A Deinonychosauria including troodontids and dromaeosaurids was
    recovered as in many recent analyses. Positioning troodontids closer to >>> Aves than dromaeosaurids only requires a single additional step, but
    non-eumaniraptoran troodontids are less parsimonious at six more steps. >>> Scansoriopterygids form the first branch of Avialae, matching their
    stratigraphic placement, and constraining them as basal paravians
    instead is only one step longer. Their other suggested position as
    oviraptorosaurs requires 12 more steps though, so is unlikely. While
    Pedopenna emerges as a scansoriopterygid in the MPTs, one step moves the >>> fragmentary specimen to Archaeopterygidae instead. The juvenile
    Zhongornis branches next, with alternative positions in
    Scansoriopterygidae or Confuciusornithiformes being four and five steps >>> longer respectively."

    The placement of the enigmatic Scansoriopterygids has been highly
    varied. Check out:
    https://en.wikipedia.org/wiki/Scansoriopterygidae
    The only tree it shows puts them well outside Avialae, and above the
    tree there is a long
    discussion of numerous other analyses.
    Not sure of your point. Are you claiming that we should judge a
    phylogeny on the basis of whether it's represented in Wikipedia?

    I suggest you compare the Mortimer et.al. matrix with one or more of
    the ones
    among the analyses listed.
    The proper citation, incidentally, is "Hartman et al.". And haven't the >>> authors done that comparison already? See Fig. S1. I also note that the >>> legitimacy of all this is enhanced, if any such were necessary, by my
    observation that the editor was Hans-Dieter Sues.

    I ask again: what, if any of this, is relevant to the question that
    began the post?
    '
    This is the fifth of five tests that you did in replies to your OP or
    replies to replies....
    Six posts on the 8th of September.
    Couldn't you have done any of them on the original thread?
    That's where I've been looking for a reply for the last five days.
    Or you could have told me about your tests in the "False Dichotomy..."
    thread where we communicated until well into Friday.

    Having trouble with usenet these days. Posts never load, posts
    disappear. You see only the successful tests. I'm lucky that reply
    turned up anywhere.


    This is yet another test.

    It came through.

    --- SoupGate-Win32 v1.05
    * Origin: fsxNet Usenet Gateway (21:1/5)
  • From Peter Nyikos@21:1/5 to John Harshman on Wed Sep 14 18:08:59 2022
    On Tuesday, September 13, 2022 at 9:15:57 AM UTC-4, John Harshman wrote:
    On 9/12/22 7:34 PM, Peter Nyikos wrote:
    On Thursday, September 8, 2022 at 4:55:34 PM UTC-4, John Harshman wrote:
    On 9/8/22 9:53 AM, John Harshman wrote:
    On 9/8/22 6:59 AM, Peter Nyikos wrote:
    On Tuesday, August 30, 2022 at 10:55:52 PM UTC-4, John Harshman wrote: >>>>> On 8/30/22 2:34 PM, Peter Nyikos wrote:
    On Monday, August 29, 2022 at 4:28:18 PM UTC-4, John Harshman wrote: >>>>
    More importantly, the article in question is a legitimate
    contribution to the paleontology literature,

    How do you know? Did you investigate the matrix (or matrices?) that >>> Mortimer and co.
    used to generate their phylogenetic trees in Fig. 17 and Fig. 18?

    No. I just read the paper. Did you?

    I've read enough of it to see two deficiencies and several peculiar
    details.
    Which of those details is relevant to whether the article is a
    legitimate contribution, and if so, why?

    Do you disagree?

    Yes. To begin with, a simple scan shows that they nowhere mention
    which taxon
    they used to root the tree. Very sloppy writing, refereeing, and
    editing is to blame, wouldn't you say?
    Not true. The outgroup to Maniraptoromorpha is stated to be a large
    selection of taxa, with Dilophosaurus as the ultimate outgroup.

    Just above Fig. 17 is the following sentence:

    "As *Ornitholestes* has never been recovered as a tyrannosauroid it
    is considered the most basal well supported member of Maniraptoromorpha >>> here."

    And yet, Ornitholestes appears neither in Fig. 17 nor Fig. 18. Their
    trees apparently don't
    show the breadth of Maniraptoromorpha. More sloppiness.
    That's because as stated those figures were pruned to emphasize
    important stuff. For the full tree, see F

    ig. S2.>
    Also, to a layman like me, it seems peculiar that they would use 700
    characters,
    and claim that their choice is better than that of Maryanska et. al., >>>> and yet it takes so little change to make some pretty big shifts.
    Not clear what part of that seems peculiar. But the last bit is a
    problem that's common to trees using paleontological data. It results
    from the limited information in skeletal characters and the large amount >>> of missing data even for skeletal characters.

    "A Deinonychosauria including troodontids and dromaeosaurids was
    recovered as in many recent analyses. Positioning troodontids closer to >>> Aves than dromaeosaurids only requires a single additional step, but
    non-eumaniraptoran troodontids are less parsimonious at six more steps. >>> Scansoriopterygids form the first branch of Avialae, matching their
    stratigraphic placement, and constraining them as basal paravians
    instead is only one step longer. Their other suggested position as
    oviraptorosaurs requires 12 more steps though, so is unlikely. While
    Pedopenna emerges as a scansoriopterygid in the MPTs, one step moves the >>> fragmentary specimen to Archaeopterygidae instead. The juvenile
    Zhongornis branches next, with alternative positions in
    Scansoriopterygidae or Confuciusornithiformes being four and five steps >>> longer respectively."

    The placement of the enigmatic Scansoriopterygids has been highly
    varied. Check out:
    https://en.wikipedia.org/wiki/Scansoriopterygidae
    The only tree it shows puts them well outside Avialae, and above the
    tree there is a long
    discussion of numerous other analyses.
    Not sure of your point. Are you claiming that we should judge a
    phylogeny on the basis of whether it's represented in Wikipedia?

    I suggest you compare the Mortimer et.al. matrix with one or more of
    the ones
    among the analyses listed.
    The proper citation, incidentally, is "Hartman et al.". And haven't the >>> authors done that comparison already? See Fig. S1. I also note that the >>> legitimacy of all this is enhanced, if any such were necessary, by my
    observation that the editor was Hans-Dieter Sues.

    I ask again: what, if any of this, is relevant to the question that
    began the post?



    On 9/8/22 6:59 AM, Peter Nyikos wrote:
    On Tuesday, August 30, 2022 at 10:55:52 PM UTC-4, John Harshman wrote: >>>> On 8/30/22 2:34 PM, Peter Nyikos wrote:
    On Monday, August 29, 2022 at 4:28:18 PM UTC-4, John Harshman wrote: >>>
    More importantly, the article in question is a legitimate
    contribution to the paleontology literature,

    How do you know? Did you investigate the matrix (or matrices?) that
    Mortimer and co.
    used to generate their phylogenetic trees in Fig. 17 and Fig. 18?

    No. I just read the paper. Did you?

    I've read enough of it to see two deficiencies and several peculiar
    details.
    Which of those details is relevant to whether the article is a
    legitimate contribution, and if so, why?

    Do you disagree?

    Yes. To begin with, a simple scan shows that they nowhere mention
    which taxon
    they used to root the tree. Very sloppy writing, refereeing, and
    editing is to blame, wouldn't you say?
    Not true. The outgroup to Maniraptoromorpha is stated to be a large
    selection of taxa, with Dilophosaurus as the ultimate outgroup.

    Just above Fig. 17 is the following sentence:

    "As *Ornitholestes* has never been recovered as a tyrannosauroid it
    is considered the most basal well supported member of Maniraptoromorpha
    here."

    And yet, Ornitholestes appears neither in Fig. 17 nor Fig. 18. Their
    trees apparently don't
    show the breadth of Maniraptoromorpha. More sloppiness.
    That's because as stated those figures were pruned to emphasize
    important stuff. For the full tree, see F

    ig. S2.>
    Also, to a layman like me, it seems peculiar that they would use 700
    characters,
    and claim that their choice is better than that of Maryanska et. al.,
    and yet it takes so little change to make some pretty big shifts.
    Not clear what part of that seems peculiar. But the last bit is a
    problem that's common to trees using paleontological data. It results
    from the limited information in skeletal characters and the large amount >> of missing data even for skeletal characters.

    "A Deinonychosauria including troodontids and dromaeosaurids was
    recovered as in many recent analyses. Positioning troodontids closer to
    Aves than dromaeosaurids only requires a single additional step, but
    non-eumaniraptoran troodontids are less parsimonious at six more steps.
    Scansoriopterygids form the first branch of Avialae, matching their
    stratigraphic placement, and constraining them as basal paravians
    instead is only one step longer. Their other suggested position as
    oviraptorosaurs requires 12 more steps though, so is unlikely. While
    Pedopenna emerges as a scansoriopterygid in the MPTs, one step moves the >> fragmentary specimen to Archaeopterygidae instead. The juvenile
    Zhongornis branches next, with alternative positions in
    Scansoriopterygidae or Confuciusornithiformes being four and five steps
    longer respectively."

    The placement of the enigmatic Scansoriopterygids has been highly
    varied. Check out:
    https://en.wikipedia.org/wiki/Scansoriopterygidae
    The only tree it shows puts them well outside Avialae, and above the
    tree there is a long
    discussion of numerous other analyses.
    Not sure of your point. Are you claiming that we should judge a
    phylogeny on the basis of whether it's represented in Wikipedia?

    I suggest you compare the Mortimer et.al. matrix with one or more of
    the ones
    among the analyses listed.
    The proper citation, incidentally, is "Hartman et al.". And haven't the
    authors done that comparison already? See Fig. S1. I also note that the
    legitimacy of all this is enhanced, if any such were necessary, by my
    observation that the editor was Hans-Dieter Sues.

    I ask again: what, if any of this, is relevant to the question that
    began the post?
    '
    This is the fifth of five tests that you did in replies to your OP or replies to replies....
    Six posts on the 8th of September.
    Couldn't you have done any of them on the original thread?
    That's where I've been looking for a reply for the last five days.
    Or you could have told me about your tests in the "False Dichotomy..." thread where we communicated until well into Friday.

    Having trouble with usenet these days. Posts never load, posts
    disappear. You see only the successful tests. I'm lucky that reply
    turned up anywhere.

    As did five earlier ones, including the OP. See above.

    Have you made sure your internet connection is good both before
    and after you attempt the posts?

    Now, a request: let me know whether YOU see this post.
    Because I don't want for you to wonder what happened to me after
    tomorrow evening. I'll be on a posting break starting then and
    ending on Monday, the 26th. Then, if your troubles are over,
    I will deal with what you've kept repeating about Mickey
    on this thread, and also on the "False Dichotomy..." thread.

    Peter Nyikos

    --- SoupGate-Win32 v1.05
    * Origin: fsxNet Usenet Gateway (21:1/5)
  • From John Harshman@21:1/5 to Peter Nyikos on Wed Sep 14 19:33:47 2022
    On 9/14/22 6:08 PM, Peter Nyikos wrote:
    On Tuesday, September 13, 2022 at 9:15:57 AM UTC-4, John Harshman wrote:
    On 9/12/22 7:34 PM, Peter Nyikos wrote:
    On Thursday, September 8, 2022 at 4:55:34 PM UTC-4, John Harshman wrote: >>>> On 9/8/22 9:53 AM, John Harshman wrote:
    On 9/8/22 6:59 AM, Peter Nyikos wrote:
    On Tuesday, August 30, 2022 at 10:55:52 PM UTC-4, John Harshman wrote: >>>>>>> On 8/30/22 2:34 PM, Peter Nyikos wrote:
    On Monday, August 29, 2022 at 4:28:18 PM UTC-4, John Harshman wrote: >>>>>>
    More importantly, the article in question is a legitimate
    contribution to the paleontology literature,

    How do you know? Did you investigate the matrix (or matrices?) that >>>>> Mortimer and co.
    used to generate their phylogenetic trees in Fig. 17 and Fig. 18? >>>>>>
    No. I just read the paper. Did you?

    I've read enough of it to see two deficiencies and several peculiar >>>>> details.
    Which of those details is relevant to whether the article is a
    legitimate contribution, and if so, why?

    Do you disagree?

    Yes. To begin with, a simple scan shows that they nowhere mention
    which taxon
    they used to root the tree. Very sloppy writing, refereeing, and
    editing is to blame, wouldn't you say?
    Not true. The outgroup to Maniraptoromorpha is stated to be a large
    selection of taxa, with Dilophosaurus as the ultimate outgroup.

    Just above Fig. 17 is the following sentence:

    "As *Ornitholestes* has never been recovered as a tyrannosauroid it >>>>> is considered the most basal well supported member of Maniraptoromorpha >>>>> here."

    And yet, Ornitholestes appears neither in Fig. 17 nor Fig. 18. Their >>>>> trees apparently don't
    show the breadth of Maniraptoromorpha. More sloppiness.
    That's because as stated those figures were pruned to emphasize
    important stuff. For the full tree, see F

    ig. S2.>
    Also, to a layman like me, it seems peculiar that they would use 700 >>>>> characters,
    and claim that their choice is better than that of Maryanska et. al., >>>>>> and yet it takes so little change to make some pretty big shifts.
    Not clear what part of that seems peculiar. But the last bit is a
    problem that's common to trees using paleontological data. It results >>>>> from the limited information in skeletal characters and the large amount >>>>> of missing data even for skeletal characters.

    "A Deinonychosauria including troodontids and dromaeosaurids was
    recovered as in many recent analyses. Positioning troodontids closer to >>>>> Aves than dromaeosaurids only requires a single additional step, but >>>>> non-eumaniraptoran troodontids are less parsimonious at six more steps. >>>>> Scansoriopterygids form the first branch of Avialae, matching their
    stratigraphic placement, and constraining them as basal paravians
    instead is only one step longer. Their other suggested position as
    oviraptorosaurs requires 12 more steps though, so is unlikely. While >>>>> Pedopenna emerges as a scansoriopterygid in the MPTs, one step moves the >>>>> fragmentary specimen to Archaeopterygidae instead. The juvenile
    Zhongornis branches next, with alternative positions in
    Scansoriopterygidae or Confuciusornithiformes being four and five steps >>>>> longer respectively."

    The placement of the enigmatic Scansoriopterygids has been highly
    varied. Check out:
    https://en.wikipedia.org/wiki/Scansoriopterygidae
    The only tree it shows puts them well outside Avialae, and above the >>>>> tree there is a long
    discussion of numerous other analyses.
    Not sure of your point. Are you claiming that we should judge a
    phylogeny on the basis of whether it's represented in Wikipedia?

    I suggest you compare the Mortimer et.al. matrix with one or more of >>>>> the ones
    among the analyses listed.
    The proper citation, incidentally, is "Hartman et al.". And haven't the >>>>> authors done that comparison already? See Fig. S1. I also note that the >>>>> legitimacy of all this is enhanced, if any such were necessary, by my >>>>> observation that the editor was Hans-Dieter Sues.

    I ask again: what, if any of this, is relevant to the question that
    began the post?



    On 9/8/22 6:59 AM, Peter Nyikos wrote:
    On Tuesday, August 30, 2022 at 10:55:52 PM UTC-4, John Harshman wrote: >>>>>> On 8/30/22 2:34 PM, Peter Nyikos wrote:
    On Monday, August 29, 2022 at 4:28:18 PM UTC-4, John Harshman wrote: >>>>>
    More importantly, the article in question is a legitimate
    contribution to the paleontology literature,

    How do you know? Did you investigate the matrix (or matrices?) that >>>> Mortimer and co.
    used to generate their phylogenetic trees in Fig. 17 and Fig. 18?

    No. I just read the paper. Did you?

    I've read enough of it to see two deficiencies and several peculiar
    details.
    Which of those details is relevant to whether the article is a
    legitimate contribution, and if so, why?

    Do you disagree?

    Yes. To begin with, a simple scan shows that they nowhere mention
    which taxon
    they used to root the tree. Very sloppy writing, refereeing, and
    editing is to blame, wouldn't you say?
    Not true. The outgroup to Maniraptoromorpha is stated to be a large
    selection of taxa, with Dilophosaurus as the ultimate outgroup.

    Just above Fig. 17 is the following sentence:

    "As *Ornitholestes* has never been recovered as a tyrannosauroid it
    is considered the most basal well supported member of Maniraptoromorpha >>>> here."

    And yet, Ornitholestes appears neither in Fig. 17 nor Fig. 18. Their
    trees apparently don't
    show the breadth of Maniraptoromorpha. More sloppiness.
    That's because as stated those figures were pruned to emphasize
    important stuff. For the full tree, see F

    ig. S2.>
    Also, to a layman like me, it seems peculiar that they would use 700
    characters,
    and claim that their choice is better than that of Maryanska et. al., >>>>> and yet it takes so little change to make some pretty big shifts.
    Not clear what part of that seems peculiar. But the last bit is a
    problem that's common to trees using paleontological data. It results
    from the limited information in skeletal characters and the large amount >>>> of missing data even for skeletal characters.

    "A Deinonychosauria including troodontids and dromaeosaurids was
    recovered as in many recent analyses. Positioning troodontids closer to >>>> Aves than dromaeosaurids only requires a single additional step, but
    non-eumaniraptoran troodontids are less parsimonious at six more steps. >>>> Scansoriopterygids form the first branch of Avialae, matching their
    stratigraphic placement, and constraining them as basal paravians
    instead is only one step longer. Their other suggested position as
    oviraptorosaurs requires 12 more steps though, so is unlikely. While
    Pedopenna emerges as a scansoriopterygid in the MPTs, one step moves the >>>> fragmentary specimen to Archaeopterygidae instead. The juvenile
    Zhongornis branches next, with alternative positions in
    Scansoriopterygidae or Confuciusornithiformes being four and five steps >>>> longer respectively."

    The placement of the enigmatic Scansoriopterygids has been highly
    varied. Check out:
    https://en.wikipedia.org/wiki/Scansoriopterygidae
    The only tree it shows puts them well outside Avialae, and above the
    tree there is a long
    discussion of numerous other analyses.
    Not sure of your point. Are you claiming that we should judge a
    phylogeny on the basis of whether it's represented in Wikipedia?

    I suggest you compare the Mortimer et.al. matrix with one or more of
    the ones
    among the analyses listed.
    The proper citation, incidentally, is "Hartman et al.". And haven't the >>>> authors done that comparison already? See Fig. S1. I also note that the >>>> legitimacy of all this is enhanced, if any such were necessary, by my
    observation that the editor was Hans-Dieter Sues.

    I ask again: what, if any of this, is relevant to the question that
    began the post?
    '
    This is the fifth of five tests that you did in replies to your OP or replies to replies....
    Six posts on the 8th of September.
    Couldn't you have done any of them on the original thread?
    That's where I've been looking for a reply for the last five days.
    Or you could have told me about your tests in the "False Dichotomy..."
    thread where we communicated until well into Friday.

    Having trouble with usenet these days. Posts never load, posts
    disappear. You see only the successful tests. I'm lucky that reply
    turned up anywhere.

    As did five earlier ones, including the OP. See above.

    Have you made sure your internet connection is good both before
    and after you attempt the posts?

    Now, a request: let me know whether YOU see this post.
    Because I don't want for you to wonder what happened to me after
    tomorrow evening. I'll be on a posting break starting then and
    ending on Monday, the 26th. Then, if your troubles are over,
    I will deal with what you've kept repeating about Mickey
    on this thread, and also on the "False Dichotomy..." thread.

    More than anything else, I would like to know why you found it necessary
    to belabor who's a paleontologist and who isn't, in the apparent belief
    that I had at some time claimed to be a paleontologist.

    --- SoupGate-Win32 v1.05
    * Origin: fsxNet Usenet Gateway (21:1/5)
  • From Peter Nyikos@21:1/5 to John Harshman on Thu Sep 15 05:55:49 2022
    On Wednesday, September 14, 2022 at 10:33:51 PM UTC-4, John Harshman wrote:
    On 9/14/22 6:08 PM, Peter Nyikos wrote:
    On Tuesday, September 13, 2022 at 9:15:57 AM UTC-4, John Harshman wrote:
    On 9/12/22 7:34 PM, Peter Nyikos wrote:
    On Thursday, September 8, 2022 at 4:55:34 PM UTC-4, John Harshman wrote: >>>> On 9/8/22 9:53 AM, John Harshman wrote:
    On 9/8/22 6:59 AM, Peter Nyikos wrote:
    On Tuesday, August 30, 2022 at 10:55:52 PM UTC-4, John Harshman wrote: >>>>>>> On 8/30/22 2:34 PM, Peter Nyikos wrote:
    On Monday, August 29, 2022 at 4:28:18 PM UTC-4, John Harshman wrote: >>>>>>
    More importantly, the article in question is a legitimate
    contribution to the paleontology literature,

    How do you know? Did you investigate the matrix (or matrices?) that >>>>> Mortimer and co.
    used to generate their phylogenetic trees in Fig. 17 and Fig. 18? >>>>>>
    No. I just read the paper. Did you?

    I've read enough of it to see two deficiencies and several peculiar >>>>> details.
    Which of those details is relevant to whether the article is a
    legitimate contribution, and if so, why?

    Do you disagree?

    Yes. To begin with, a simple scan shows that they nowhere mention >>>>> which taxon
    they used to root the tree. Very sloppy writing, refereeing, and
    editing is to blame, wouldn't you say?
    Not true. The outgroup to Maniraptoromorpha is stated to be a large >>>>> selection of taxa, with Dilophosaurus as the ultimate outgroup.

    Just above Fig. 17 is the following sentence:

    "As *Ornitholestes* has never been recovered as a tyrannosauroid it >>>>> is considered the most basal well supported member of Maniraptoromorpha >>>>> here."

    And yet, Ornitholestes appears neither in Fig. 17 nor Fig. 18. Their >>>>> trees apparently don't
    show the breadth of Maniraptoromorpha. More sloppiness.
    That's because as stated those figures were pruned to emphasize
    important stuff. For the full tree, see F

    ig. S2.>
    Also, to a layman like me, it seems peculiar that they would use 700 >>>>> characters,
    and claim that their choice is better than that of Maryanska et. al., >>>>>> and yet it takes so little change to make some pretty big shifts. >>>>> Not clear what part of that seems peculiar. But the last bit is a
    problem that's common to trees using paleontological data. It results >>>>> from the limited information in skeletal characters and the large amount
    of missing data even for skeletal characters.

    "A Deinonychosauria including troodontids and dromaeosaurids was
    recovered as in many recent analyses. Positioning troodontids closer to >>>>> Aves than dromaeosaurids only requires a single additional step, but >>>>> non-eumaniraptoran troodontids are less parsimonious at six more steps. >>>>> Scansoriopterygids form the first branch of Avialae, matching their >>>>> stratigraphic placement, and constraining them as basal paravians
    instead is only one step longer. Their other suggested position as >>>>> oviraptorosaurs requires 12 more steps though, so is unlikely. While >>>>> Pedopenna emerges as a scansoriopterygid in the MPTs, one step moves the
    fragmentary specimen to Archaeopterygidae instead. The juvenile
    Zhongornis branches next, with alternative positions in
    Scansoriopterygidae or Confuciusornithiformes being four and five steps >>>>> longer respectively."

    The placement of the enigmatic Scansoriopterygids has been highly >>>>> varied. Check out:
    https://en.wikipedia.org/wiki/Scansoriopterygidae
    The only tree it shows puts them well outside Avialae, and above the >>>>> tree there is a long
    discussion of numerous other analyses.
    Not sure of your point. Are you claiming that we should judge a
    phylogeny on the basis of whether it's represented in Wikipedia?

    I suggest you compare the Mortimer et.al. matrix with one or more of >>>>> the ones
    among the analyses listed.
    The proper citation, incidentally, is "Hartman et al.". And haven't the >>>>> authors done that comparison already? See Fig. S1. I also note that the >>>>> legitimacy of all this is enhanced, if any such were necessary, by my >>>>> observation that the editor was Hans-Dieter Sues.

    I ask again: what, if any of this, is relevant to the question that >>>>> began the post?



    On 9/8/22 6:59 AM, Peter Nyikos wrote:
    On Tuesday, August 30, 2022 at 10:55:52 PM UTC-4, John Harshman wrote: >>>>>> On 8/30/22 2:34 PM, Peter Nyikos wrote:
    On Monday, August 29, 2022 at 4:28:18 PM UTC-4, John Harshman wrote: >>>>>
    More importantly, the article in question is a legitimate
    contribution to the paleontology literature,

    How do you know? Did you investigate the matrix (or matrices?) that >>>> Mortimer and co.
    used to generate their phylogenetic trees in Fig. 17 and Fig. 18? >>>>>
    No. I just read the paper. Did you?

    I've read enough of it to see two deficiencies and several peculiar >>>> details.
    Which of those details is relevant to whether the article is a
    legitimate contribution, and if so, why?

    Do you disagree?

    Yes. To begin with, a simple scan shows that they nowhere mention
    which taxon
    they used to root the tree. Very sloppy writing, refereeing, and
    editing is to blame, wouldn't you say?
    Not true. The outgroup to Maniraptoromorpha is stated to be a large
    selection of taxa, with Dilophosaurus as the ultimate outgroup.

    Just above Fig. 17 is the following sentence:

    "As *Ornitholestes* has never been recovered as a tyrannosauroid it >>>> is considered the most basal well supported member of Maniraptoromorpha >>>> here."

    And yet, Ornitholestes appears neither in Fig. 17 nor Fig. 18. Their >>>> trees apparently don't
    show the breadth of Maniraptoromorpha. More sloppiness.
    That's because as stated those figures were pruned to emphasize
    important stuff. For the full tree, see F

    ig. S2.>
    Also, to a layman like me, it seems peculiar that they would use 700 >>>> characters,
    and claim that their choice is better than that of Maryanska et. al., >>>>> and yet it takes so little change to make some pretty big shifts.
    Not clear what part of that seems peculiar. But the last bit is a
    problem that's common to trees using paleontological data. It results >>>> from the limited information in skeletal characters and the large amount >>>> of missing data even for skeletal characters.

    "A Deinonychosauria including troodontids and dromaeosaurids was
    recovered as in many recent analyses. Positioning troodontids closer to >>>> Aves than dromaeosaurids only requires a single additional step, but >>>> non-eumaniraptoran troodontids are less parsimonious at six more steps. >>>> Scansoriopterygids form the first branch of Avialae, matching their
    stratigraphic placement, and constraining them as basal paravians
    instead is only one step longer. Their other suggested position as
    oviraptorosaurs requires 12 more steps though, so is unlikely. While >>>> Pedopenna emerges as a scansoriopterygid in the MPTs, one step moves the >>>> fragmentary specimen to Archaeopterygidae instead. The juvenile
    Zhongornis branches next, with alternative positions in
    Scansoriopterygidae or Confuciusornithiformes being four and five steps >>>> longer respectively."

    The placement of the enigmatic Scansoriopterygids has been highly
    varied. Check out:
    https://en.wikipedia.org/wiki/Scansoriopterygidae
    The only tree it shows puts them well outside Avialae, and above the >>>> tree there is a long
    discussion of numerous other analyses.
    Not sure of your point. Are you claiming that we should judge a
    phylogeny on the basis of whether it's represented in Wikipedia?

    I suggest you compare the Mortimer et.al. matrix with one or more of >>>> the ones
    among the analyses listed.
    The proper citation, incidentally, is "Hartman et al.". And haven't the >>>> authors done that comparison already? See Fig. S1. I also note that the >>>> legitimacy of all this is enhanced, if any such were necessary, by my >>>> observation that the editor was Hans-Dieter Sues.

    I ask again: what, if any of this, is relevant to the question that
    began the post?
    '
    This is the fifth of five tests that you did in replies to your OP or replies to replies....
    Six posts on the 8th of September.
    Couldn't you have done any of them on the original thread?
    That's where I've been looking for a reply for the last five days.
    Or you could have told me about your tests in the "False Dichotomy..." >>> thread where we communicated until well into Friday.

    Having trouble with usenet these days. Posts never load, posts
    disappear. You see only the successful tests. I'm lucky that reply
    turned up anywhere.

    As did five earlier ones, including the OP. See above.

    Have you made sure your internet connection is good both before
    and after you attempt the posts?

    Now, a request: let me know whether YOU see this post.
    Because I don't want for you to wonder what happened to me after
    tomorrow evening. I'll be on a posting break starting then and
    ending on Monday, the 26th. Then, if your troubles are over,
    I will deal with what you've kept repeating about Mickey
    on this thread, and also on the "False Dichotomy..." thread.
    More than anything else, I would like to know why you found it necessary
    to belabor who's a paleontologist and who isn't, in the apparent belief
    that I had at some time claimed to be a paleontologist.

    You've shown that I misinterpreted what you had said about yourself,
    and so I've gotten the message loud and clear that you don't
    consider yourself to be one.

    But it never was primarily about you. It was because of your
    inconsistent standards as to who is to be considered a paleontologist
    as far as sci.bio.paleontology is concerned. You were quite
    protective of Oxyaena's claim to be a paleontologist without
    ever asking her what her qualifications were. Now you claim
    that to be one, one must "do paleontology" [whatever that means to you]
    and have published a research paper on paleontology
    in a (respected?) scientific journal. Just how changeable
    are your opinions on this?


    The bottom line is this: It's up to us to set standards to scrutinize
    any Tom, Dick, Harry or Shirley who comes waltzing into
    sci.bio.paleontology claiming to be a paleontologist.
    That also applies if they claim that they live with a paleontologist.
    [Recall that Oxyaena first claimed that "my husband" is a paleontologist,
    and only claimed to be a paleontologist later.]

    If we wait too long to set these standards, we may lose
    control of the situation, and s.b.p. will be on the road
    to extinction. We've got it a nearly dozen-year lease on life
    since the beginning of 2011, and I for one would like
    to see that continue as long as I post here.


    Peter Nyikos

    --- SoupGate-Win32 v1.05
    * Origin: fsxNet Usenet Gateway (21:1/5)
  • From John Harshman@21:1/5 to Peter Nyikos on Fri Sep 16 06:35:02 2022
    On 9/15/22 5:55 AM, Peter Nyikos wrote:
    On Wednesday, September 14, 2022 at 10:33:51 PM UTC-4, John Harshman wrote:
    On 9/14/22 6:08 PM, Peter Nyikos wrote:
    On Tuesday, September 13, 2022 at 9:15:57 AM UTC-4, John Harshman wrote: >>>> On 9/12/22 7:34 PM, Peter Nyikos wrote:
    On Thursday, September 8, 2022 at 4:55:34 PM UTC-4, John Harshman wrote: >>>>>> On 9/8/22 9:53 AM, John Harshman wrote:
    On 9/8/22 6:59 AM, Peter Nyikos wrote:
    On Tuesday, August 30, 2022 at 10:55:52 PM UTC-4, John Harshman wrote: >>>>>>>>> On 8/30/22 2:34 PM, Peter Nyikos wrote:
    On Monday, August 29, 2022 at 4:28:18 PM UTC-4, John Harshman wrote: >>>>>>>>
    More importantly, the article in question is a legitimate >>>>>>>>>>> contribution to the paleontology literature,

    How do you know? Did you investigate the matrix (or matrices?) that >>>>>>> Mortimer and co.
    used to generate their phylogenetic trees in Fig. 17 and Fig. 18? >>>>>>>>
    No. I just read the paper. Did you?

    I've read enough of it to see two deficiencies and several peculiar >>>>>>> details.
    Which of those details is relevant to whether the article is a
    legitimate contribution, and if so, why?

    Do you disagree?

    Yes. To begin with, a simple scan shows that they nowhere mention >>>>>>> which taxon
    they used to root the tree. Very sloppy writing, refereeing, and >>>>>>> editing is to blame, wouldn't you say?
    Not true. The outgroup to Maniraptoromorpha is stated to be a large >>>>>>> selection of taxa, with Dilophosaurus as the ultimate outgroup.

    Just above Fig. 17 is the following sentence:

    "As *Ornitholestes* has never been recovered as a tyrannosauroid it >>>>>>> is considered the most basal well supported member of Maniraptoromorpha >>>>>>> here."

    And yet, Ornitholestes appears neither in Fig. 17 nor Fig. 18. Their >>>>>>> trees apparently don't
    show the breadth of Maniraptoromorpha. More sloppiness.
    That's because as stated those figures were pruned to emphasize
    important stuff. For the full tree, see F

    ig. S2.>
    Also, to a layman like me, it seems peculiar that they would use 700 >>>>>>> characters,
    and claim that their choice is better than that of Maryanska et. al., >>>>>>>> and yet it takes so little change to make some pretty big shifts. >>>>>>> Not clear what part of that seems peculiar. But the last bit is a >>>>>>> problem that's common to trees using paleontological data. It results >>>>>>> from the limited information in skeletal characters and the large amount
    of missing data even for skeletal characters.

    "A Deinonychosauria including troodontids and dromaeosaurids was >>>>>>> recovered as in many recent analyses. Positioning troodontids closer to >>>>>>> Aves than dromaeosaurids only requires a single additional step, but >>>>>>> non-eumaniraptoran troodontids are less parsimonious at six more steps. >>>>>>> Scansoriopterygids form the first branch of Avialae, matching their >>>>>>> stratigraphic placement, and constraining them as basal paravians >>>>>>> instead is only one step longer. Their other suggested position as >>>>>>> oviraptorosaurs requires 12 more steps though, so is unlikely. While >>>>>>> Pedopenna emerges as a scansoriopterygid in the MPTs, one step moves the
    fragmentary specimen to Archaeopterygidae instead. The juvenile
    Zhongornis branches next, with alternative positions in
    Scansoriopterygidae or Confuciusornithiformes being four and five steps >>>>>>> longer respectively."

    The placement of the enigmatic Scansoriopterygids has been highly >>>>>>> varied. Check out:
    https://en.wikipedia.org/wiki/Scansoriopterygidae
    The only tree it shows puts them well outside Avialae, and above the >>>>>>> tree there is a long
    discussion of numerous other analyses.
    Not sure of your point. Are you claiming that we should judge a
    phylogeny on the basis of whether it's represented in Wikipedia? >>>>>>>
    I suggest you compare the Mortimer et.al. matrix with one or more of >>>>>>> the ones
    among the analyses listed.
    The proper citation, incidentally, is "Hartman et al.". And haven't the >>>>>>> authors done that comparison already? See Fig. S1. I also note that the >>>>>>> legitimacy of all this is enhanced, if any such were necessary, by my >>>>>>> observation that the editor was Hans-Dieter Sues.

    I ask again: what, if any of this, is relevant to the question that >>>>>>> began the post?



    On 9/8/22 6:59 AM, Peter Nyikos wrote:
    On Tuesday, August 30, 2022 at 10:55:52 PM UTC-4, John Harshman wrote: >>>>>>>> On 8/30/22 2:34 PM, Peter Nyikos wrote:
    On Monday, August 29, 2022 at 4:28:18 PM UTC-4, John Harshman wrote: >>>>>>>
    More importantly, the article in question is a legitimate
    contribution to the paleontology literature,

    How do you know? Did you investigate the matrix (or matrices?) that >>>>>> Mortimer and co.
    used to generate their phylogenetic trees in Fig. 17 and Fig. 18? >>>>>>>
    No. I just read the paper. Did you?

    I've read enough of it to see two deficiencies and several peculiar >>>>>> details.
    Which of those details is relevant to whether the article is a
    legitimate contribution, and if so, why?

    Do you disagree?

    Yes. To begin with, a simple scan shows that they nowhere mention >>>>>> which taxon
    they used to root the tree. Very sloppy writing, refereeing, and
    editing is to blame, wouldn't you say?
    Not true. The outgroup to Maniraptoromorpha is stated to be a large >>>>>> selection of taxa, with Dilophosaurus as the ultimate outgroup.

    Just above Fig. 17 is the following sentence:

    "As *Ornitholestes* has never been recovered as a tyrannosauroid it >>>>>> is considered the most basal well supported member of Maniraptoromorpha >>>>>> here."

    And yet, Ornitholestes appears neither in Fig. 17 nor Fig. 18. Their >>>>>> trees apparently don't
    show the breadth of Maniraptoromorpha. More sloppiness.
    That's because as stated those figures were pruned to emphasize
    important stuff. For the full tree, see F

    ig. S2.>
    Also, to a layman like me, it seems peculiar that they would use 700 >>>>>> characters,
    and claim that their choice is better than that of Maryanska et. al., >>>>>>> and yet it takes so little change to make some pretty big shifts. >>>>>> Not clear what part of that seems peculiar. But the last bit is a
    problem that's common to trees using paleontological data. It results >>>>>> from the limited information in skeletal characters and the large amount >>>>>> of missing data even for skeletal characters.

    "A Deinonychosauria including troodontids and dromaeosaurids was
    recovered as in many recent analyses. Positioning troodontids closer to >>>>>> Aves than dromaeosaurids only requires a single additional step, but >>>>>> non-eumaniraptoran troodontids are less parsimonious at six more steps. >>>>>> Scansoriopterygids form the first branch of Avialae, matching their >>>>>> stratigraphic placement, and constraining them as basal paravians
    instead is only one step longer. Their other suggested position as >>>>>> oviraptorosaurs requires 12 more steps though, so is unlikely. While >>>>>> Pedopenna emerges as a scansoriopterygid in the MPTs, one step moves the >>>>>> fragmentary specimen to Archaeopterygidae instead. The juvenile
    Zhongornis branches next, with alternative positions in
    Scansoriopterygidae or Confuciusornithiformes being four and five steps >>>>>> longer respectively."

    The placement of the enigmatic Scansoriopterygids has been highly >>>>>> varied. Check out:
    https://en.wikipedia.org/wiki/Scansoriopterygidae
    The only tree it shows puts them well outside Avialae, and above the >>>>>> tree there is a long
    discussion of numerous other analyses.
    Not sure of your point. Are you claiming that we should judge a
    phylogeny on the basis of whether it's represented in Wikipedia?

    I suggest you compare the Mortimer et.al. matrix with one or more of >>>>>> the ones
    among the analyses listed.
    The proper citation, incidentally, is "Hartman et al.". And haven't the >>>>>> authors done that comparison already? See Fig. S1. I also note that the >>>>>> legitimacy of all this is enhanced, if any such were necessary, by my >>>>>> observation that the editor was Hans-Dieter Sues.

    I ask again: what, if any of this, is relevant to the question that >>>>>> began the post?
    '
    This is the fifth of five tests that you did in replies to your OP or replies to replies....
    Six posts on the 8th of September.
    Couldn't you have done any of them on the original thread?
    That's where I've been looking for a reply for the last five days.
    Or you could have told me about your tests in the "False Dichotomy..." >>>>> thread where we communicated until well into Friday.

    Having trouble with usenet these days. Posts never load, posts
    disappear. You see only the successful tests. I'm lucky that reply
    turned up anywhere.

    As did five earlier ones, including the OP. See above.

    Have you made sure your internet connection is good both before
    and after you attempt the posts?

    Now, a request: let me know whether YOU see this post.
    Because I don't want for you to wonder what happened to me after
    tomorrow evening. I'll be on a posting break starting then and
    ending on Monday, the 26th. Then, if your troubles are over,
    I will deal with what you've kept repeating about Mickey
    on this thread, and also on the "False Dichotomy..." thread.
    More than anything else, I would like to know why you found it necessary
    to belabor who's a paleontologist and who isn't, in the apparent belief
    that I had at some time claimed to be a paleontologist.

    You've shown that I misinterpreted what you had said about yourself,
    and so I've gotten the message loud and clear that you don't
    consider yourself to be one.

    But it never was primarily about you. It was because of your
    inconsistent standards as to who is to be considered a paleontologist
    as far as sci.bio.paleontology is concerned. You were quite
    protective of Oxyaena's claim to be a paleontologist without
    ever asking her what her qualifications were. Now you claim
    that to be one, one must "do paleontology" [whatever that means to you]
    and have published a research paper on paleontology
    in a (respected?) scientific journal. Just how changeable
    are your opinions on this?


    The bottom line is this: It's up to us to set standards to scrutinize
    any Tom, Dick, Harry or Shirley who comes waltzing into sci.bio.paleontology claiming to be a paleontologist.
    That also applies if they claim that they live with a paleontologist.
    [Recall that Oxyaena first claimed that "my husband" is a paleontologist,
    and only claimed to be a paleontologist later.]

    If we wait too long to set these standards, we may lose
    control of the situation, and s.b.p. will be on the road
    to extinction. We've got it a nearly dozen-year lease on life
    since the beginning of 2011, and I for one would like
    to see that continue as long as I post here.

    Third try: I don't think there are any fake paleontologists posting here
    at the moment, and even the one real paleontologist who posts has not to
    my knowledge claimed to be one. So you seem to be seeking a solution to
    a non-problem.

    But how about this? Assume people are what they say they are, whether paleontologist, mathematician, or bricklayer, until there is good
    evidence that they aren't. If for some unknown reason you need
    confirmation of professional status, ask for a citation to one of their publications. Non-problem solved.

    --- SoupGate-Win32 v1.05
    * Origin: fsxNet Usenet Gateway (21:1/5)
  • From John Harshman@21:1/5 to John Harshman on Fri Sep 16 09:52:40 2022
    On 9/16/22 6:35 AM, John Harshman wrote:
    On 9/15/22 5:55 AM, Peter Nyikos wrote:
    On Wednesday, September 14, 2022 at 10:33:51 PM UTC-4, John Harshman
    wrote:
    On 9/14/22 6:08 PM, Peter Nyikos wrote:
    On Tuesday, September 13, 2022 at 9:15:57 AM UTC-4, John Harshman
    wrote:
    On 9/12/22 7:34 PM, Peter Nyikos wrote:
    On Thursday, September 8, 2022 at 4:55:34 PM UTC-4, John Harshman
    wrote:
    On 9/8/22 9:53 AM, John Harshman wrote:
    On 9/8/22 6:59 AM, Peter Nyikos wrote:
    On Tuesday, August 30, 2022 at 10:55:52 PM UTC-4, John Harshman >>>>>>>>> wrote:
    On 8/30/22 2:34 PM, Peter Nyikos wrote:
    On Monday, August 29, 2022 at 4:28:18 PM UTC-4, John Harshman >>>>>>>>>>> wrote:

    More importantly, the article in question is a legitimate >>>>>>>>>>>> contribution to the paleontology literature,

    How do you know? Did you investigate the matrix (or
    matrices?) that
    Mortimer and co.
    used to generate their phylogenetic trees in Fig. 17 and Fig. >>>>>>>>>>> 18?

    No. I just read the paper. Did you?

    I've read enough of it to see two deficiencies and several
    peculiar
    details.
    Which of those details is relevant to whether the article is a >>>>>>>> legitimate contribution, and if so, why?

    Do you disagree?

    Yes. To begin with, a simple scan shows that they nowhere mention >>>>>>>> which taxon
    they used to root the tree. Very sloppy writing, refereeing, and >>>>>>>> editing is to blame, wouldn't you say?
    Not true. The outgroup to Maniraptoromorpha is stated to be a large >>>>>>>> selection of taxa, with Dilophosaurus as the ultimate outgroup. >>>>>>>>
    Just above Fig. 17 is the following sentence:

    "As *Ornitholestes* has never been recovered as a
    tyrannosauroid it
    is considered the most basal well supported member of
    Maniraptoromorpha
    here."

    And yet, Ornitholestes appears neither in Fig. 17 nor Fig. 18. >>>>>>>>> Their
    trees apparently don't
    show the breadth of Maniraptoromorpha. More sloppiness.
    That's because as stated those figures were pruned to emphasize >>>>>>>> important stuff. For the full tree, see F

    ig. S2.>
    Also, to a layman like me, it seems peculiar that they would >>>>>>>>> use 700
    characters,
    and claim that their choice is better than that of Maryanska >>>>>>>>> et. al.,
    and yet it takes so little change to make some pretty big shifts. >>>>>>>> Not clear what part of that seems peculiar. But the last bit is a >>>>>>>> problem that's common to trees using paleontological data. It
    results
    from the limited information in skeletal characters and the
    large amount
    of missing data even for skeletal characters.

    "A Deinonychosauria including troodontids and dromaeosaurids was >>>>>>>> recovered as in many recent analyses. Positioning troodontids
    closer to
    Aves than dromaeosaurids only requires a single additional step, >>>>>>>> but
    non-eumaniraptoran troodontids are less parsimonious at six more >>>>>>>> steps.
    Scansoriopterygids form the first branch of Avialae, matching their >>>>>>>> stratigraphic placement, and constraining them as basal paravians >>>>>>>> instead is only one step longer. Their other suggested position as >>>>>>>> oviraptorosaurs requires 12 more steps though, so is unlikely. >>>>>>>> While
    Pedopenna emerges as a scansoriopterygid in the MPTs, one step >>>>>>>> moves the
    fragmentary specimen to Archaeopterygidae instead. The juvenile >>>>>>>> Zhongornis branches next, with alternative positions in
    Scansoriopterygidae or Confuciusornithiformes being four and
    five steps
    longer respectively."

    The placement of the enigmatic Scansoriopterygids has been highly >>>>>>>> varied. Check out:
    https://en.wikipedia.org/wiki/Scansoriopterygidae
    The only tree it shows puts them well outside Avialae, and
    above the
    tree there is a long
    discussion of numerous other analyses.
    Not sure of your point. Are you claiming that we should judge a >>>>>>>> phylogeny on the basis of whether it's represented in Wikipedia? >>>>>>>>
    I suggest you compare the Mortimer et.al. matrix with one or >>>>>>>>> more of
    the ones
    among the analyses listed.
    The proper citation, incidentally, is "Hartman et al.". And
    haven't the
    authors done that comparison already? See Fig. S1. I also note >>>>>>>> that the
    legitimacy of all this is enhanced, if any such were necessary, >>>>>>>> by my
    observation that the editor was Hans-Dieter Sues.

    I ask again: what, if any of this, is relevant to the question that >>>>>>>> began the post?



    On 9/8/22 6:59 AM, Peter Nyikos wrote:
    On Tuesday, August 30, 2022 at 10:55:52 PM UTC-4, John Harshman >>>>>>>> wrote:
    On 8/30/22 2:34 PM, Peter Nyikos wrote:
    On Monday, August 29, 2022 at 4:28:18 PM UTC-4, John Harshman >>>>>>>>>> wrote:

    More importantly, the article in question is a legitimate >>>>>>>>>>> contribution to the paleontology literature,

    How do you know? Did you investigate the matrix (or matrices?) >>>>>>>>>> that
    Mortimer and co.
    used to generate their phylogenetic trees in Fig. 17 and Fig. 18? >>>>>>>>
    No. I just read the paper. Did you?

    I've read enough of it to see two deficiencies and several peculiar >>>>>>> details.
    Which of those details is relevant to whether the article is a
    legitimate contribution, and if so, why?

    Do you disagree?

    Yes. To begin with, a simple scan shows that they nowhere mention >>>>>>> which taxon
    they used to root the tree. Very sloppy writing, refereeing, and >>>>>>> editing is to blame, wouldn't you say?
    Not true. The outgroup to Maniraptoromorpha is stated to be a large >>>>>>> selection of taxa, with Dilophosaurus as the ultimate outgroup.

    Just above Fig. 17 is the following sentence:

    "As *Ornitholestes* has never been recovered as a tyrannosauroid it >>>>>>> is considered the most basal well supported member of
    Maniraptoromorpha
    here."

    And yet, Ornitholestes appears neither in Fig. 17 nor Fig. 18. >>>>>>>> Their
    trees apparently don't
    show the breadth of Maniraptoromorpha. More sloppiness.
    That's because as stated those figures were pruned to emphasize
    important stuff. For the full tree, see F

    ig. S2.>
    Also, to a layman like me, it seems peculiar that they would use >>>>>>>> 700
    characters,
    and claim that their choice is better than that of Maryanska et. >>>>>>>> al.,
    and yet it takes so little change to make some pretty big shifts. >>>>>>> Not clear what part of that seems peculiar. But the last bit is a >>>>>>> problem that's common to trees using paleontological data. It
    results
    from the limited information in skeletal characters and the large >>>>>>> amount
    of missing data even for skeletal characters.

    "A Deinonychosauria including troodontids and dromaeosaurids was >>>>>>> recovered as in many recent analyses. Positioning troodontids
    closer to
    Aves than dromaeosaurids only requires a single additional step, but >>>>>>> non-eumaniraptoran troodontids are less parsimonious at six more >>>>>>> steps.
    Scansoriopterygids form the first branch of Avialae, matching their >>>>>>> stratigraphic placement, and constraining them as basal paravians >>>>>>> instead is only one step longer. Their other suggested position as >>>>>>> oviraptorosaurs requires 12 more steps though, so is unlikely. While >>>>>>> Pedopenna emerges as a scansoriopterygid in the MPTs, one step
    moves the
    fragmentary specimen to Archaeopterygidae instead. The juvenile
    Zhongornis branches next, with alternative positions in
    Scansoriopterygidae or Confuciusornithiformes being four and five >>>>>>> steps
    longer respectively."

    The placement of the enigmatic Scansoriopterygids has been highly >>>>>>> varied. Check out:
    https://en.wikipedia.org/wiki/Scansoriopterygidae
    The only tree it shows puts them well outside Avialae, and above >>>>>>>> the
    tree there is a long
    discussion of numerous other analyses.
    Not sure of your point. Are you claiming that we should judge a
    phylogeny on the basis of whether it's represented in Wikipedia? >>>>>>>
    I suggest you compare the Mortimer et.al. matrix with one or
    more of
    the ones
    among the analyses listed.
    The proper citation, incidentally, is "Hartman et al.". And
    haven't the
    authors done that comparison already? See Fig. S1. I also note
    that the
    legitimacy of all this is enhanced, if any such were necessary,
    by my
    observation that the editor was Hans-Dieter Sues.

    I ask again: what, if any of this, is relevant to the question that >>>>>>> began the post?
    '
    This is the fifth of five tests that you did in replies to your OP >>>>>> or replies to replies....
    Six posts on the 8th of September.
    Couldn't you have done any of them on the original thread?
    That's where I've been looking for a reply for the last five days. >>>>>> Or you could have told me about your tests in the "False
    Dichotomy..."
    thread where we communicated until well into Friday.

    Having trouble with usenet these days. Posts never load, posts
    disappear. You see only the successful tests. I'm lucky that reply
    turned up anywhere.

    As did five earlier ones, including the OP. See above.

    Have you made sure your internet connection is good both before
    and after you attempt the posts?

    Now, a request: let me know whether YOU see this post.
    Because I don't want for you to wonder what happened to me after
    tomorrow evening. I'll be on a posting break starting then and
    ending on Monday, the 26th. Then, if your troubles are over,
    I will deal with what you've kept repeating about Mickey
    on this thread, and also on the "False Dichotomy..." thread.
    More than anything else, I would like to know why you found it necessary >>> to belabor who's a paleontologist and who isn't, in the apparent belief
    that I had at some time claimed to be a paleontologist.

    You've shown that I misinterpreted what you had said about yourself,
    and so I've gotten the message loud and clear that you don't
    consider yourself to be one.

    But it never was primarily about you. It was because of your
    inconsistent standards as to who is to be considered a paleontologist
    as far as sci.bio.paleontology is concerned. You were quite
    protective of Oxyaena's claim to be a paleontologist without
    ever asking her what her qualifications were. Now you claim
    that to be one, one must "do paleontology" [whatever that means to you]
    and have published a research paper on paleontology
    in a (respected?) scientific journal. Just how changeable
    are your opinions on this?


    The bottom line is this: It's up to us to set standards to scrutinize
      any Tom, Dick, Harry or Shirley who comes waltzing into
    sci.bio.paleontology claiming to be a paleontologist.
    That also applies if they claim that they live with a paleontologist.
    [Recall that Oxyaena first claimed that "my husband" is a paleontologist,
    and only claimed to be a paleontologist later.]

    If we wait too long to set these standards, we may lose
    control of the situation, and s.b.p. will be on the road
    to extinction. We've got it a nearly dozen-year lease on life
    since the beginning of 2011, and I for one would like
    to see that continue as long as I post here.

    Third try: I don't think there are any fake paleontologists posting here
    at the moment, and even the one real paleontologist who posts has not to
    my knowledge claimed to be one. So you seem to be seeking a solution to
    a non-problem.

    But how about this? Assume people are what they say they are, whether paleontologist, mathematician, or bricklayer, until there is good
    evidence that they aren't. If for some unknown reason you need
    confirmation of professional status, ask for a citation to one of their publications. Non-problem solved.


    So that one worked. How about this one?

    --- SoupGate-Win32 v1.05
    * Origin: fsxNet Usenet Gateway (21:1/5)
  • From Glenn@21:1/5 to John Harshman on Fri Sep 16 17:00:12 2022
    On Friday, September 16, 2022 at 9:52:45 AM UTC-7, John Harshman wrote:
    On 9/16/22 6:35 AM, John Harshman wrote:
    On 9/15/22 5:55 AM, Peter Nyikos wrote:
    On Wednesday, September 14, 2022 at 10:33:51 PM UTC-4, John Harshman
    wrote:
    On 9/14/22 6:08 PM, Peter Nyikos wrote:
    On Tuesday, September 13, 2022 at 9:15:57 AM UTC-4, John Harshman
    wrote:
    On 9/12/22 7:34 PM, Peter Nyikos wrote:
    On Thursday, September 8, 2022 at 4:55:34 PM UTC-4, John Harshman >>>>>> wrote:
    On 9/8/22 9:53 AM, John Harshman wrote:
    On 9/8/22 6:59 AM, Peter Nyikos wrote:
    On Tuesday, August 30, 2022 at 10:55:52 PM UTC-4, John Harshman >>>>>>>>> wrote:
    On 8/30/22 2:34 PM, Peter Nyikos wrote:
    On Monday, August 29, 2022 at 4:28:18 PM UTC-4, John Harshman >>>>>>>>>>> wrote:

    More importantly, the article in question is a legitimate >>>>>>>>>>>> contribution to the paleontology literature,

    How do you know? Did you investigate the matrix (or
    matrices?) that
    Mortimer and co.
    used to generate their phylogenetic trees in Fig. 17 and Fig. >>>>>>>>>>> 18?

    No. I just read the paper. Did you?

    I've read enough of it to see two deficiencies and several >>>>>>>>> peculiar
    details.
    Which of those details is relevant to whether the article is a >>>>>>>> legitimate contribution, and if so, why?

    Do you disagree?

    Yes. To begin with, a simple scan shows that they nowhere mention >>>>>>>> which taxon
    they used to root the tree. Very sloppy writing, refereeing, and >>>>>>>> editing is to blame, wouldn't you say?
    Not true. The outgroup to Maniraptoromorpha is stated to be a large >>>>>>>> selection of taxa, with Dilophosaurus as the ultimate outgroup. >>>>>>>>
    Just above Fig. 17 is the following sentence:

    "As *Ornitholestes* has never been recovered as a
    tyrannosauroid it
    is considered the most basal well supported member of
    Maniraptoromorpha
    here."

    And yet, Ornitholestes appears neither in Fig. 17 nor Fig. 18. >>>>>>>>> Their
    trees apparently don't
    show the breadth of Maniraptoromorpha. More sloppiness.
    That's because as stated those figures were pruned to emphasize >>>>>>>> important stuff. For the full tree, see F

    ig. S2.>
    Also, to a layman like me, it seems peculiar that they would >>>>>>>>> use 700
    characters,
    and claim that their choice is better than that of Maryanska >>>>>>>>> et. al.,
    and yet it takes so little change to make some pretty big shifts. >>>>>>>> Not clear what part of that seems peculiar. But the last bit is a >>>>>>>> problem that's common to trees using paleontological data. It >>>>>>>> results
    from the limited information in skeletal characters and the
    large amount
    of missing data even for skeletal characters.

    "A Deinonychosauria including troodontids and dromaeosaurids was >>>>>>>> recovered as in many recent analyses. Positioning troodontids >>>>>>>> closer to
    Aves than dromaeosaurids only requires a single additional step, >>>>>>>> but
    non-eumaniraptoran troodontids are less parsimonious at six more >>>>>>>> steps.
    Scansoriopterygids form the first branch of Avialae, matching their >>>>>>>> stratigraphic placement, and constraining them as basal paravians >>>>>>>> instead is only one step longer. Their other suggested position as >>>>>>>> oviraptorosaurs requires 12 more steps though, so is unlikely. >>>>>>>> While
    Pedopenna emerges as a scansoriopterygid in the MPTs, one step >>>>>>>> moves the
    fragmentary specimen to Archaeopterygidae instead. The juvenile >>>>>>>> Zhongornis branches next, with alternative positions in
    Scansoriopterygidae or Confuciusornithiformes being four and >>>>>>>> five steps
    longer respectively."

    The placement of the enigmatic Scansoriopterygids has been highly >>>>>>>> varied. Check out:
    https://en.wikipedia.org/wiki/Scansoriopterygidae
    The only tree it shows puts them well outside Avialae, and >>>>>>>>> above the
    tree there is a long
    discussion of numerous other analyses.
    Not sure of your point. Are you claiming that we should judge a >>>>>>>> phylogeny on the basis of whether it's represented in Wikipedia? >>>>>>>>
    I suggest you compare the Mortimer et.al. matrix with one or >>>>>>>>> more of
    the ones
    among the analyses listed.
    The proper citation, incidentally, is "Hartman et al.". And
    haven't the
    authors done that comparison already? See Fig. S1. I also note >>>>>>>> that the
    legitimacy of all this is enhanced, if any such were necessary, >>>>>>>> by my
    observation that the editor was Hans-Dieter Sues.

    I ask again: what, if any of this, is relevant to the question that >>>>>>>> began the post?



    On 9/8/22 6:59 AM, Peter Nyikos wrote:
    On Tuesday, August 30, 2022 at 10:55:52 PM UTC-4, John Harshman >>>>>>>> wrote:
    On 8/30/22 2:34 PM, Peter Nyikos wrote:
    On Monday, August 29, 2022 at 4:28:18 PM UTC-4, John Harshman >>>>>>>>>> wrote:

    More importantly, the article in question is a legitimate >>>>>>>>>>> contribution to the paleontology literature,

    How do you know? Did you investigate the matrix (or matrices?) >>>>>>>>>> that
    Mortimer and co.
    used to generate their phylogenetic trees in Fig. 17 and Fig. 18? >>>>>>>>
    No. I just read the paper. Did you?

    I've read enough of it to see two deficiencies and several peculiar >>>>>>> details.
    Which of those details is relevant to whether the article is a >>>>>>> legitimate contribution, and if so, why?

    Do you disagree?

    Yes. To begin with, a simple scan shows that they nowhere mention >>>>>>> which taxon
    they used to root the tree. Very sloppy writing, refereeing, and >>>>>>> editing is to blame, wouldn't you say?
    Not true. The outgroup to Maniraptoromorpha is stated to be a large >>>>>>> selection of taxa, with Dilophosaurus as the ultimate outgroup. >>>>>>>
    Just above Fig. 17 is the following sentence:

    "As *Ornitholestes* has never been recovered as a tyrannosauroid it >>>>>>> is considered the most basal well supported member of
    Maniraptoromorpha
    here."

    And yet, Ornitholestes appears neither in Fig. 17 nor Fig. 18. >>>>>>>> Their
    trees apparently don't
    show the breadth of Maniraptoromorpha. More sloppiness.
    That's because as stated those figures were pruned to emphasize >>>>>>> important stuff. For the full tree, see F

    ig. S2.>
    Also, to a layman like me, it seems peculiar that they would use >>>>>>>> 700
    characters,
    and claim that their choice is better than that of Maryanska et. >>>>>>>> al.,
    and yet it takes so little change to make some pretty big shifts. >>>>>>> Not clear what part of that seems peculiar. But the last bit is a >>>>>>> problem that's common to trees using paleontological data. It
    results
    from the limited information in skeletal characters and the large >>>>>>> amount
    of missing data even for skeletal characters.

    "A Deinonychosauria including troodontids and dromaeosaurids was >>>>>>> recovered as in many recent analyses. Positioning troodontids
    closer to
    Aves than dromaeosaurids only requires a single additional step, but >>>>>>> non-eumaniraptoran troodontids are less parsimonious at six more >>>>>>> steps.
    Scansoriopterygids form the first branch of Avialae, matching their >>>>>>> stratigraphic placement, and constraining them as basal paravians >>>>>>> instead is only one step longer. Their other suggested position as >>>>>>> oviraptorosaurs requires 12 more steps though, so is unlikely. While >>>>>>> Pedopenna emerges as a scansoriopterygid in the MPTs, one step >>>>>>> moves the
    fragmentary specimen to Archaeopterygidae instead. The juvenile >>>>>>> Zhongornis branches next, with alternative positions in
    Scansoriopterygidae or Confuciusornithiformes being four and five >>>>>>> steps
    longer respectively."

    The placement of the enigmatic Scansoriopterygids has been highly >>>>>>> varied. Check out:
    https://en.wikipedia.org/wiki/Scansoriopterygidae
    The only tree it shows puts them well outside Avialae, and above >>>>>>>> the
    tree there is a long
    discussion of numerous other analyses.
    Not sure of your point. Are you claiming that we should judge a >>>>>>> phylogeny on the basis of whether it's represented in Wikipedia? >>>>>>>
    I suggest you compare the Mortimer et.al. matrix with one or >>>>>>>> more of
    the ones
    among the analyses listed.
    The proper citation, incidentally, is "Hartman et al.". And
    haven't the
    authors done that comparison already? See Fig. S1. I also note >>>>>>> that the
    legitimacy of all this is enhanced, if any such were necessary, >>>>>>> by my
    observation that the editor was Hans-Dieter Sues.

    I ask again: what, if any of this, is relevant to the question that >>>>>>> began the post?
    '
    This is the fifth of five tests that you did in replies to your OP >>>>>> or replies to replies....
    Six posts on the 8th of September.
    Couldn't you have done any of them on the original thread?
    That's where I've been looking for a reply for the last five days. >>>>>> Or you could have told me about your tests in the "False
    Dichotomy..."
    thread where we communicated until well into Friday.

    Having trouble with usenet these days. Posts never load, posts
    disappear. You see only the successful tests. I'm lucky that reply >>>>> turned up anywhere.

    As did five earlier ones, including the OP. See above.

    Have you made sure your internet connection is good both before
    and after you attempt the posts?

    Now, a request: let me know whether YOU see this post.
    Because I don't want for you to wonder what happened to me after
    tomorrow evening. I'll be on a posting break starting then and
    ending on Monday, the 26th. Then, if your troubles are over,
    I will deal with what you've kept repeating about Mickey
    on this thread, and also on the "False Dichotomy..." thread.
    More than anything else, I would like to know why you found it necessary >>> to belabor who's a paleontologist and who isn't, in the apparent belief >>> that I had at some time claimed to be a paleontologist.

    You've shown that I misinterpreted what you had said about yourself,
    and so I've gotten the message loud and clear that you don't
    consider yourself to be one.

    But it never was primarily about you. It was because of your
    inconsistent standards as to who is to be considered a paleontologist
    as far as sci.bio.paleontology is concerned. You were quite
    protective of Oxyaena's claim to be a paleontologist without
    ever asking her what her qualifications were. Now you claim
    that to be one, one must "do paleontology" [whatever that means to you]
    and have published a research paper on paleontology
    in a (respected?) scientific journal. Just how changeable
    are your opinions on this?


    The bottom line is this: It's up to us to set standards to scrutinize
    any Tom, Dick, Harry or Shirley who comes waltzing into
    sci.bio.paleontology claiming to be a paleontologist.
    That also applies if they claim that they live with a paleontologist.
    [Recall that Oxyaena first claimed that "my husband" is a paleontologist, >> and only claimed to be a paleontologist later.]

    If we wait too long to set these standards, we may lose
    control of the situation, and s.b.p. will be on the road
    to extinction. We've got it a nearly dozen-year lease on life
    since the beginning of 2011, and I for one would like
    to see that continue as long as I post here.

    Third try: I don't think there are any fake paleontologists posting here
    at the moment, and even the one real paleontologist who posts has not to
    my knowledge claimed to be one. So you seem to be seeking a solution to
    a non-problem.

    But how about this? Assume people are what they say they are, whether paleontologist, mathematician, or bricklayer, until there is good
    evidence that they aren't. If for some unknown reason you need
    confirmation of professional status, ask for a citation to one of their publications. Non-problem solved.


    So that one worked. How about this one?

    Yep. Let me try. Testing testing one two three.

    --- SoupGate-Win32 v1.05
    * Origin: fsxNet Usenet Gateway (21:1/5)