• Bug#265697: rpvm 0.6.2-1: FTBFS on amd64 (2/3)

    From Dirk Eddelbuettel@1:229/2 to Frederik Schueler on Mon Aug 16 04:30:11 2004
    [continued from previous message]

    Unpacking xfree86-common (from .../xfree86-common_4.3.0.dfsg.1-6_all.deb) ... Selecting previously deselected package xlibs-data.
    Unpacking xlibs-data (from .../xlibs-data_4.3.0.dfsg.1-6_all.deb) ... Selecting previously deselected package libx11-6.
    Unpacking libx11-6 (from .../libx11-6_4.3.0.dfsg.1-6_amd64.deb) ...
    Selecting previously deselected package zlib-bin.
    Unpacking zlib-bin (from .../zlib-bin_1%3a1.2.1.1-5_amd64.deb) ...
    Selecting previously deselected package tcl8.4.
    Unpacking tcl8.4 (from .../tcl8.4_8.4.7-1_amd64.deb) ...
    Selecting previously deselected package tk8.4.
    Unpacking tk8.4 (from .../tk8.4_8.4.7-1_amd64.deb) ...
    Selecting previously deselected package r-base-core.
    Unpacking r-base-core (from .../r-base-core_1.9.1-2_amd64.deb) ...
    Selecting previously deselected package f2c.
    Unpacking f2c (from .../f2c_20020621-2_amd64.deb) ...
    Selecting previously deselected package type-handling.
    Unpacking type-handling (from .../type-handling_0.2.2_amd64.deb) ... Selecting previously deselected package r-base-dev.
    Unpacking r-base-dev (from .../r-base-dev_1.9.1-2_all.deb) ...
    Selecting previously deselected package libpvm3.
    Unpacking libpvm3 (from .../libpvm3_3.4.2-11_amd64.deb) ...
    Selecting previously deselected package pvm.
    Unpacking pvm (from .../pvm_3.4.2-11_amd64.deb) ...
    Selecting previously deselected package pvm-dev.
    Unpacking pvm-dev (from .../pvm-dev_3.4.2-11_amd64.deb) ...
    Setting up libreadline4 (4.3-11) ...

    Setting up libg2c0 (3.3.4-7) ...

    Setting up atlas3-base (3.6.0-15) ...

    Setting up cdbs (0.4.22-1) ...
    Setting up libg2c0-dev (3.3.4-7) ...
    Setting up g77-3.3 (3.3.4-7) ...
    Setting up g77 (3.3.4-2) ...

    Setting up refblas3 (1.2-6) ...

    Setting up lapack3 (3.0.20000531a-4) ...

    Setting up refblas3-dev (1.2-6) ...

    Setting up lapack3-dev (3.0.20000531a-4) ...

    Setting up libbz2-1.0 (1.0.2-1) ...

    Setting up libbz2-dev (1.0.2-1) ...

    Setting up libice6 (4.3.0.dfsg.1-6) ...

    Setting up libjpeg62 (6b-9) ...

    Setting up libjpeg62-dev (6b-9) ...
    Setting up libncurses5-dev (5.4-4) ...
    Setting up libpcre3-dev (4.5-1.1) ...
    Setting up libpng12-0 (1.2.5.0-7) ...

    Setting up zlib1g-dev (1.2.1.1-5) ...
    Setting up libpng12-dev (1.2.5.0-7) ...

    Setting up libreadline4-dev (4.3-11) ...

    Setting up libsm6 (4.3.0.dfsg.1-6) ...

    Setting up xfree86-common (4.3.0.dfsg.1-6) ...
    Adding system startup for /etc/init.d/xfree86-common ...
    /etc/rcS.d/S70xfree86-common -> ../init.d/xfree86-common
    Setting up X server socket directory /tmp/.X11-unix...done.
    Setting up ICE socket directory /tmp/.ICE-unix...done.

    Setting up xlibs-data (4.3.0.dfsg.1-6) ...

    Setting up libx11-6 (4.3.0.dfsg.1-6) ...

    Setting up zlib-bin (1.2.1.1-5) ...
    Setting up tcl8.4 (8.4.7-1) ...

    Setting up tk8.4 (8.4.7-1) ...

    Setting up r-base-core (1.9.1-2) ...

    Setting up f2c (20020621-2) ...

    Setting up type-handling (0.2.2) ...
    Setting up r-base-dev (1.9.1-2) ...
    Setting up libpvm3 (3.4.2-11) ...

    Setting up pvm (3.4.2-11) ...

    Setting up pvm-dev (3.4.2-11) ...
    Checking correctness of source dependencies... ------------------------------------------------------------------------------
    dpkg-source: extracting rpvm in rpvm-0.6.2
    dpkg-buildpackage: source package is rpvm
    dpkg-buildpackage: source version is 0.6.2-1
    dpkg-buildpackage: host architecture is amd64
    fakeroot debian/rules clean
    test -x debian/rules
    test "`id -u`" = 0
    if test -n "" && test "" != "."; then rmdir ""; fi
    if test "." != "."; then rmdir .; fi
    dh_clean
    debian/rules build
    test -x debian/rules
    if [ -n "" ]; then \
    mkdir -p ""; \
    fi
    if [ ! -d "." ]; then \
    mkdir -p "."; \
    fi
    if [ -z "" ]; then \
    if ! test -f debian/compat; then echo 4 > debian/compat; fi; \
    fi
    fakeroot debian/rules binary
    test -x debian/rules
    test "`id -u`" = 0
    dh_clean -k
    dh_installdirs -A
    if [ -n "" ]; then \
    mkdir -p ""; \
    fi
    if [ ! -d "." ]; then \
    mkdir -p "."; \
    fi
    if [ -z "" ]; then \
    if ! test -f debian/compat; then echo 4 > debian/compat; fi; \
    fi
    dh_installdirs usr/lib/R/site-library
    R CMD INSTALL -l /home/freddy/build/rpvm/rpvm-0.6.2/debian/r-cran-rpvm/usr/lib/R/site-library --clean .
    * Installing *source* package 'rpvm' ...
    checking for gcc... gcc
    checking for C compiler default output... a.out
    checking whether the C compiler works... yes
    checking whether we are cross compiling... no
    checking for suffix of executables...
    checking for suffix of object files... o
    checking whether we are using the GNU C compiler... yes
    checking whether gcc accepts -g... yes
    Check if PVM_ROOT is defined... no
    Warning: PVM_ROOT not defined.
    I'll try to build rpvm but you need set PVM_ROOT
    before use pvm. See pvm_intro(1PVM)

    Try to guess if pvm is installed somewhere ...
    Found pvm: /usr/lib/pvm3
    PVM_ROOT is /usr/lib/pvm3
    PVM_ARCH is LINUXAMD64
    checking how to run the C preprocessor... gcc -E
    checking for ANSI C header files... yes
    checking for sys/types.h... yes
    checking for sys/stat.h... yes
    checking for stdlib.h... yes
    checking for string.h... yes
    checking for memory.h... yes
    checking for strings.h... yes
    checking for inttypes.h... yes
    checking for stdint.h... yes
    checking for unistd.h... yes
    checking pvm3.h usability... yes
    checking pvm3.h presence... yes
    checking for pvm3.h... yes
    checking for main in -lpvm3... yes
    checking for main in -lgpvm3... yes
    checking for pvmd... /usr/bin/pvmd
    checking for pvmgs... /usr/bin/pvmgs
    configure: creating ./config.status
    config.status: creating src/Makevars
    config.status: creating inst/pvmhosts
    WARNING: UTF-8 locales are not currently supported

    ** libs
    make[1]: Entering directory `/home/freddy/build/rpvm/rpvm-0.6.2/src'
    gcc -I/usr/lib/R/include -I/include -fPIC -g -O2 -c rpvm_core.c -o rpvm_core.o
    gcc -I/usr/lib/R/include -I/include -fPIC -g -O2 -c rpvm_ser.c -o rpvm_ser.o
    gcc -I/usr/lib/R/include -I/include -fPIC -g -O2 -c utils.c -o utils.o gcc -shared -o rpvm.so rpvm_core.o rpvm_ser.o utils.o -lpvm3 -lgpvm3 -lreadline -lncurses -L/usr/lib/R/bin -lR
    /usr/bin/ld: /usr/lib/gcc-lib/x86_64-linux/3.3.4/../../../../lib64/libgpvm3.a(pvmgsu_core.o): relocation R_X86_64_32 can not be used when making a shared object; recompile with -fPIC
    /usr/lib/gcc-lib/x86_64-linux/3.3.4/../../../../lib64/libgpvm3.a: could not read symbols: Bad value
    collect2: ld returned 1 exit status
    make[1]: *** [rpvm.so] Error 1
    make[1]: Leaving directory `/home/freddy/build/rpvm/rpvm-0.6.2/src'
    ERROR: compilation failed for package 'rpvm'
    ** Removing '/home/freddy/build/rpvm/rpvm-0.6.2/debian/r-cran-rpvm/usr/lib/R/site-library/rpvm'
    make: *** [R_any_arch] Error 1 ******************************************************************************
    Build finished at 20040813-1926
    FAILED [dpkg-buildpackage died] ------------------------------------------------------------------------------

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