• Bug#1103227: [R-pkg-team] Bug#1103227: [reply ] r-bioc-grohmm: FTBFS: D

    From Charles Plessy@21:1/5 to All on Thu Apr 17 08:20:01 2025
    Le Thu, Apr 17, 2025 at 01:37:01PM +0800, liwenjun a �crit :

    I founded a commit on the upstream for fixing this problem:

    Bioconductor Code: groHMM <https://code.bioconductor.org/browse/groHMM/commit/261791bdd2802badced2ba6dc1f0bdddd07a85df>

    Or you might prefer to upgrade the major version to their lastest release 1.42.0.

    Thanks liwenjun,

    can you propose a patch based on the upstream commit? Do you have write access to our Salsa repositories?

    I figured out that we can not directly use the new version because our toolchain detects it belongs to BioC 3.21 and intentionally adds a virtual dependency that prevents the package from co-existing with BioC 3.20 packages. It's easy to workaround with a patch, but in that case patching the current version in Debian is as easy and more conservative.

    Cheers,

    Charles

    --
    Charles Plessy Nagahama, Yomitan, Okinawa, Japan
    Debian Med packaging team http://www.debian.org/devel/debian-med Tooting from home https://framapiaf.org/@charles_plessy
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