[continued from previous message]

13:46:22.442 WARN NativeGenomicsDB - pid=7318 tid=7318 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.4/obj-aarch64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead
13:46:22.442 DEBUG NativeGenomicsDB - pid=7318 tid=7318 json file /build/reproducible-path/genomicsdb-1.5.4/obj-aarch64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets):

missing field sample_name

13:46:22.443 WARN NativeGenomicsDB - pid=7318 tid=7318 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.4/obj-aarch64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON

file instead

0.007 s: Try query with ISHOMREF
0.024 s: api query_variant_calls with protobuf
0.004 s: Base configuration
0.006 s: api query_variant_calls with protobuf and config
13:46:22.455 ERROR NativeGenomicsDB - pid=7318 tid=7318 Could not parse query_configuration. Only protobuf QueryConfiguration binary strings accepted as input argument
0.000 s: Subset Array with pb string that is not Query or ExportConfiguration 0.001 s: api query_variant_calls with protobuf and config
0.004 s: Subset Array using QueryConfiguration
0.006 s: api query_variant_calls with protobuf and config
0.004 s: Subset Array using ExportConfiguration
0.006 s: api query_variant_calls with protobuf and config
0.004 s: Subset Array using QueryConfiguration - two intervals
0.006 s: api query_variant_calls with protobuf and config
0.006 s: Subset Array using QueryConfiguration - multiple queries
0.007 s: api query_variant_calls with protobuf and config
0.025 s: Test filter test for 0
0.026 s: api query_variant_calls with protobuf new
0.006 s: Test filter test for 1
0.006 s: api query_variant_calls with protobuf new
0.006 s: Test filter test for 2
0.006 s: api query_variant_calls with protobuf new
0.006 s: Test filter test for 3
0.006 s: api query_variant_calls with protobuf new
273 {"HG00141":{"CHR":["1","1"],"POS":[12141,17385],"DP":[null,null],"GT":["C/C","G/A"],"REF":["C","G"]},"HG01530":{"CHR":["1"],"POS":[17385],"DP":[76],"GT":["G/A"],"REF":["G"]},"HG01958":{"CHR":["1","1"],"POS":[12145,17385],"DP":[null,120],"GT":["C/C",

"T/T"],"REF":["C","G"]}}

207 {"FIELD":["CHR","POS","DP","GT","REF"],"HG00141":[["1",12141,null,"C/C","C"],["1",17385,null,"G/A","G"]],"HG01530":[["1",17385,76,"G/A","G"]],"HG01958":[["1",12145,null,"C/C","C"],["1",17385,120,"T/T","G"]]}

37 {"HG00141":2,"HG01530":1,"HG01958":2}

15 {"num_calls":5}

15 {"num_calls":5}

31 ["HG00141","HG01530","HG01958"]

~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
api_tests is a Catch2 v3.7.1 host application.
Run with -? for options

-------------------------------------------------------------------------------
api query_variant_calls with JSONVariantCallProcessor -------------------------------------------------------------------------------
./src/test/cpp/src/test_genomicsdb_api.cc:887 ...............................................................................

./src/test/cpp/src/test_genomicsdb_api.cc:997: FAILED:
CHECK( output.length() == 1805 )
with expansion:
1807 (0x70f) == 1805 (0x70d)

1807 {"HG00141":{"CHR":["1","1"],"POS":[12141,17385],"AD":[null,58],"BaseQRankSum":[null,-2.0959999561309816],"ClippingRankSum":[null,-1.8589999675750733],"DP":[null,null],"DP_FORMAT":[2,80],"DS":["1","1"],"FILTER":[null,0],"GQ":[0,99],"GT":["C/C","G/A"

],"HaplotypeScore":[null,null],"InbreedingCoeff":[null,null],"MIN_DP":[0,null],"MLEAC":[null,1],"MLEAF":[null,0.5],"MQ":[null,31.719999313354493],"MQ0":[null,8],"MQRankSum":[null,-0.32899999618530276],"PGT":[null,"0|1"],"PID":[null,"17385_G_A"],"PL":[0,
504],"QUAL":[null,475.7699890136719],"RAW_MQ":[null,5.5],"REF":["C","G"],"ReadPosRankSum":[null,0.004999999888241291],"SB":[null,"[58, 0, 22, 0]"]},"HG01530":{"CHR":["1"],"POS":[17385],"AD":[40],"BaseQRankSum":[1.0460000038146973],"ClippingRankSum":[-2.
242000102996826],"DP":[76],"DP_FORMAT":[76],"DS":["127"],"FILTER":[null],"GQ":[99],"GT":["G/A"],"HaplotypeScore":[null],"InbreedingCoeff":[null],"MIN_DP":[null],"MLEAC":[1],"MLEAF":[0.5],"MQ":[59.369998931884769],"MQ0":[0],"MQRankSum":[-0.
4320000112056732],"PGT":[null],"PID":[null],"PL":[1018],"QUAL":[989.77001953125],"RAW_MQ":[null],"REF":["G"],"ReadPosRankSum":[2.055000066757202],"SB":["[9, 31, 13, 23]"]},"HG01958":{"CHR":["1","1"],"POS":[12145,17385],"AD":[null,0],"BaseQRankSum":[null,-
2.0739998817443849],"ClippingRankSum":[null,0.5550000071525574],"DP":[null,120],"DP_FORMAT":[3,120],"DS":["1","127"],"FILTER":[null,0],"GQ":[0,99],"GT":["C/C","T/T"],"HaplotypeScore":[null,null],"InbreedingCoeff":[null,null],"MIN_DP":[0,null],"MLEAC":[
null,2],"MLEAF":[null,1.0],"MQ":[null,29.81999969482422],"MQ0":[null,3],"MQRankSum":[null,-1.36899995803833],"PGT":[null,"0|1"],"PID":[null,"17385_G_T"],"PL":[0,3336],"QUAL":[null,3302.77001953125],"RAW_MQ":[null,2.5],"REF":["C","G"],"ReadPosRankSum":[
null,-0.10100000351667404],"SB":[null,"[0, 0, 0, 0]"]}}

0.044 s: api query_variant_calls with JSONVariantCallProcessor
0.000 s: Test genomicsdb demo test case
0.039 s: api generate_vcf direct
13:46:22.605 DEBUG NativeGenomicsDB - pid=7318 tid=7318 json file /build/reproducible-path/genomicsdb-1.5.4/obj-aarch64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].

begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn

13:46:22.605 WARN NativeGenomicsDB - pid=7318 tid=7318 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.4/obj-aarch64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead
13:46:22.605 DEBUG NativeGenomicsDB - pid=7318 tid=7318 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name
0.009 s: api generate_vcf with json
13:46:22.614 DEBUG NativeGenomicsDB - pid=7318 tid=7322 json file /build/reproducible-path/genomicsdb-1.5.4/obj-aarch64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].

begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn

13:46:22.614 WARN NativeGenomicsDB - pid=7318 tid=7322 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.4/obj-aarch64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead
13:46:22.615 DEBUG NativeGenomicsDB - pid=7318 tid=7325 json file /build/reproducible-path/genomicsdb-1.5.4/obj-aarch64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].

begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn

13:46:22.615 WARN NativeGenomicsDB - pid=7318 tid=7325 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.4/obj-aarch64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead
13:46:22.615 DEBUG NativeGenomicsDB - pid=7318 tid=7322 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name
13:46:22.615 DEBUG NativeGenomicsDB - pid=7318 tid=7325 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name
13:46:22.618 DEBUG NativeGenomicsDB - pid=7318 tid=7326 json file /build/reproducible-path/genomicsdb-1.5.4/obj-aarch64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].

begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn

13:46:22.618 WARN NativeGenomicsDB - pid=7318 tid=7326 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.4/obj-aarch64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead
13:46:22.618 DEBUG NativeGenomicsDB - pid=7318 tid=7326 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name
13:46:22.614 DEBUG NativeGenomicsDB - pid=7318 tid=7324 json file /build/reproducible-path/genomicsdb-1.5.4/obj-aarch64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].

begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn

13:46:22.618 WARN NativeGenomicsDB - pid=7318 tid=7324 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.4/obj-aarch64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead
13:46:22.619 DEBUG NativeGenomicsDB - pid=7318 tid=7327 json file /build/reproducible-path/genomicsdb-1.5.4/obj-aarch64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].

begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn

13:46:22.619 WARN NativeGenomicsDB - pid=7318 tid=7327 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.4/obj-aarch64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead
13:46:22.619 DEBUG NativeGenomicsDB - pid=7318 tid=7329 json file /build/reproducible-path/genomicsdb-1.5.4/obj-aarch64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].

begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn

13:46:22.619 WARN NativeGenomicsDB - pid=7318 tid=7329 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.4/obj-aarch64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead
13:46:22.619 DEBUG NativeGenomicsDB - pid=7318 tid=7329 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name
13:46:22.619 DEBUG NativeGenomicsDB - pid=7318 tid=7324 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name
13:46:22.619 DEBUG NativeGenomicsDB - pid=7318 tid=7327 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name
13:46:22.622 DEBUG NativeGenomicsDB - pid=7318 tid=7323 json file /build/reproducible-path/genomicsdb-1.5.4/obj-aarch64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].

begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn

13:46:22.622 WARN NativeGenomicsDB - pid=7318 tid=7323 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.4/obj-aarch64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead
13:46:22.627 DEBUG NativeGenomicsDB - pid=7318 tid=7323 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name
13:46:22.648 DEBUG NativeGenomicsDB - pid=7318 tid=7328 json file /build/reproducible-path/genomicsdb-1.5.4/obj-aarch64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].

begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn

13:46:22.648 WARN NativeGenomicsDB - pid=7318 tid=7328 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.4/obj-aarch64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead
13:46:22.648 DEBUG NativeGenomicsDB - pid=7318 tid=7328 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name
0.051 s: api generate_vcf with json multiple threads
13:46:22.665 DEBUG NativeGenomicsDB - pid=7318 tid=7318 json file /build/reproducible-path/genomicsdb-1.5.4/obj-aarch64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].

begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn

13:46:22.665 WARN NativeGenomicsDB - pid=7318 tid=7318 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.4/obj-aarch64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead
13:46:22.665 DEBUG NativeGenomicsDB - pid=7318 tid=7318 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name
13:46:22.666 DEBUG NativeGenomicsDB - pid=7318 tid=7318 json file /build/reproducible-path/genomicsdb-1.5.4/obj-aarch64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name
13:46:22.666 WARN NativeGenomicsDB - pid=7318 tid=7318 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.4/obj-aarch64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead
13:46:22.666 DEBUG NativeGenomicsDB - pid=7318 tid=7318 json file /build/reproducible-path/genomicsdb-1.5.4/obj-aarch64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets):

missing field sample_name

13:46:22.666 WARN NativeGenomicsDB - pid=7318 tid=7318 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.4/obj-aarch64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON

file instead

13:46:22.673 DEBUG NativeGenomicsDB - pid=7318 tid=7318 json file /build/reproducible-path/genomicsdb-1.5.4/obj-aarch64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].

begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn

13:46:22.673 WARN NativeGenomicsDB - pid=7318 tid=7318 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.4/obj-aarch64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead
13:46:22.673 DEBUG NativeGenomicsDB - pid=7318 tid=7318 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name
13:46:22.673 DEBUG NativeGenomicsDB - pid=7318 tid=7318 json file /build/reproducible-path/genomicsdb-1.5.4/obj-aarch64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name
13:46:22.673 WARN NativeGenomicsDB - pid=7318 tid=7318 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.4/obj-aarch64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead
13:46:22.674 DEBUG NativeGenomicsDB - pid=7318 tid=7318 json file /build/reproducible-path/genomicsdb-1.5.4/obj-aarch64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets):

missing field sample_name

13:46:22.674 WARN NativeGenomicsDB - pid=7318 tid=7318 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.4/obj-aarch64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON

file instead

13:46:22.680 DEBUG NativeGenomicsDB - pid=7318 tid=7318 json file /build/reproducible-path/genomicsdb-1.5.4/obj-aarch64-linux-gnu/src/test/cpp/inputs/loader.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(column_partitions[0].

begin): invalid value 0 for type type.googleapis.com/GenomicsDBColumn

13:46:22.680 WARN NativeGenomicsDB - pid=7318 tid=7318 Could not deserialize loader file /build/reproducible-path/genomicsdb-1.5.4/obj-aarch64-linux-gnu/src/test/cpp/inputs/loader.json as protobuf. Trying to parse as a regular JSON file instead
13:46:22.680 DEBUG NativeGenomicsDB - pid=7318 tid=7318 json file inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name
13:46:22.681 DEBUG NativeGenomicsDB - pid=7318 tid=7318 json file /build/reproducible-path/genomicsdb-1.5.4/obj-aarch64-linux-gnu/src/test/cpp/inputs/vid.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(contigs): missing field name
13:46:22.681 WARN NativeGenomicsDB - pid=7318 tid=7318 Could not deserialize vid mapping file /build/reproducible-path/genomicsdb-1.5.4/obj-aarch64-linux-gnu/src/test/cpp/inputs/vid.json as protobuf. Trying to parse as a regular JSON file instead
13:46:22.681 DEBUG NativeGenomicsDB - pid=7318 tid=7318 json file /build/reproducible-path/genomicsdb-1.5.4/obj-aarch64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json does not seem to be serialized protobuf - error:INVALID_ARGUMENT:(callsets):

missing field sample_name

13:46:22.681 WARN NativeGenomicsDB - pid=7318 tid=7318 Could not deserialize callset mapping file /build/reproducible-path/genomicsdb-1.5.4/obj-aarch64-linux-gnu/src/test/cpp/inputs/callset_t0_1_2.json as protobuf. Trying to parse as a regular JSON

file instead

----------------
Interval:[0,1000000000]

----------------
Interval:[0,1000000000]

0.021 s: api annotate query_variant_calls with test datasource 0 ===============================================================================
test cases: 26 | 25 passed | 1 failed
assertions: 1531 | 1530 passed | 1 failed

test 22
Start 22: tools_tests

22: Test command: /build/reproducible-path/genomicsdb-1.5.4/tests/test_tools.sh "/build/reproducible-path/genomicsdb-1.5.4/tests/inputs/vcfs" "/build/reproducible-path/genomicsdb-1.5.4/obj-aarch64-linux-gnu/tools" "1"
22: Working Directory: /build/reproducible-path/genomicsdb-1.5.4/obj-aarch64-linux-gnu/tools
22: Test timeout computed to be: 10000000
22: 13:46:23.103 INFO NativeGenomicsDB - pid=7400 tid=7400 Reading 1 vcfs 22: 13:46:23.104 INFO NativeGenomicsDB - pid=7400 tid=7400 [STAGE 1 / 3] Reading 1 / 1 = 100.00%
22: 13:46:23.153 INFO NativeGenomicsDB - pid=7400 tid=7400 [STAGE 2 / 3] read_next_batch 0 / 1 = 0.00%
22: 13:46:23.154 INFO NativeGenomicsDB - pid=7400 tid=7400 [STAGE 3 / 3] progress: 12140 / 249250620 = 0.00%
22: [TileDB::utils] Error: (gzip_handle_error) Cannot compress with GZIP: deflateInit error: Z_STREAM_ERROR
22: [TileDB::Codec] Error: Could not compress with GZIP.
22: [TileDB::WriteState] Error: Cannot compress tile for /tmp/test_tools-GenomicsDB-1BhoXmDpmj/ws_7004/1$1$249250621/.__71a412e3-fcd4-435b-9805-42df13759a33281473768824864_1744551983141/END.tdb.
22: 13:46:23.159 ERROR NativeGenomicsDB - pid=7400 tid=7400 VariantStorageManagerException exception : Error while finalizing GenomicsDB array 1$1$249250621 : [TileDB::WriteState] Error: Cannot compress tile for /tmp/test_tools-GenomicsDB-1BhoXmDpmj/ws_

7004/1$1$249250621/.__71a412e3-fcd4-435b-9805-42df13759a33281473768824864_1744551983141/END.tdb

22: command 'vcf2genomicsdb --progress /tmp/test_tools-GenomicsDB-1BhoXmDpmj/ws_7004/loader.json' returned 139 unexpectedly
19/22 Test #22: tools_tests ......................***Failed 0.47 sec 13:46:23.103 INFO NativeGenomicsDB - pid=7400 tid=7400 Reading 1 vcfs 13:46:23.104 INFO NativeGenomicsDB - pid=7400 tid=7400 [STAGE 1 / 3] Reading 1 / 1 = 100.00%
13:46:23.153 INFO NativeGenomicsDB - pid=7400 tid=7400 [STAGE 2 / 3] read_next_batch 0 / 1 = 0.00%
13:46:23.154 INFO NativeGenomicsDB - pid=7400 tid=7400 [STAGE 3 / 3] progress: 12140 / 249250620 = 0.00%
[TileDB::utils] Error: (gzip_handle_error) Cannot compress with GZIP: deflateInit error: Z_STREAM_ERROR
[TileDB::Codec] Error: Could not compress with GZIP.
[TileDB::WriteState] Error: Cannot compress tile for /tmp/test_tools-GenomicsDB-1BhoXmDpmj/ws_7004/1$1$249250621/.__71a412e3-fcd4-435b-9805-42df13759a33281473768824864_1744551983141/END.tdb.
13:46:23.159 ERROR NativeGenomicsDB - pid=7400 tid=7400 VariantStorageManagerException exception : Error while finalizing GenomicsDB array 1$1$249250621 : [TileDB::WriteState] Error: Cannot compress tile for /tmp/test_tools-GenomicsDB-1BhoXmDpmj/ws_

7004/1$1$249250621/.__71a412e3-fcd4-435b-9805-42df13759a33281473768824864_1744551983141/END.tdb

command 'vcf2genomicsdb --progress /tmp/test_tools-GenomicsDB-1BhoXmDpmj/ws_7004/loader.json' returned 139 unexpectedly

18: ===============================================================================
18: All tests passed (450703 assertions in 3 test cases)
18:
20/22 Test #18: test_storage_buffer .............. Passed 1.59 sec
8: Randomness seeded to: 2127700894
8: 10% [=== ]
20% [====== ]
30% [========= ]
40% [============ ]
50% [=============== ]
60% [================== ]
70% [===================== ]
80% [======================= ]
89% [========================== ]
99% [============================= ] ===============================================================================
8: All tests passed (16578158 assertions in 15 test cases)
8:
21/22 Test #8: test_sparse_array_api ............ Passed 5.08 sec
7: 10% [=== ]
20% [====== ]
30% [========= ]
40% [============ ]
50% [=============== ]
60% [================== ]
70% [===================== ]
80% [======================= ]
89% [========================== ]
99% [============================= ]
10% [=== ]
20% [====== ]
30% [========= ]
40% [============ ]
50% [=============== ]
60% [================== ]
70% [===================== ]
80% [======================= ]
89% [========================== ]
99% [============================= ] ===============================================================================
7: All tests passed (174824580 assertions in 4 test cases)
7:
22/22 Test #7: test_dense_array_api ............. Passed 6.95 sec

73% tests passed, 6 tests failed out of 22

Total Test time (real) = 6.96 sec

The following tests FAILED:
5 - test_array_iterator (SEGFAULT)
6 - test_array_schema_api (Failed)
19 - ci_tests (Failed)
20 - ctests (Failed)
21 - api_tests (Failed)
22 - tools_tests (Failed)
Errors while running CTest
make[2]: *** [Makefile:74: test] Error 8
make[2]: Leaving directory '/build/reproducible-path/genomicsdb-1.5.4/obj-aarch64-linux-gnu'
dh_auto_test: error: cd obj-aarch64-linux-gnu && make -j4 test ARGS\+=--verbose ARGS\+=-j4 returned exit code 2

The full build log is available from: http://qa-logs.debian.net/2025/04/13/genomicsdb_1.5.4-5_testing.log

All bugs filed during this archive rebuild are listed at: https://bugs.debian.org/cgi-bin/pkgreport.cgi?tag=ftbfs-20250413;[email protected]
or: https://udd.debian.org/bugs/?release=na&merged=ign&fnewerval=7&flastmodval=7&fusertag=only&fusertagtag=ftbfs-20250413&[email protected]&allbugs=1&cseverity=1&ctags=1&caffected=1#results

A list of current common problems and possible solutions is available at http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!

If you reassign this bug to another package, please mark it as 'affects'-ing this package. See https://www.debian.org/Bugs/server-control#affects

If you fail to reproduce this, please provide a build log and diff it with mine so that we can identify if something relevant changed in the meantime.

--- SoupGate-Win32 v1.05
* Origin: fsxNet Usenet Gateway (21:1/5)