Source: genomicsdb
Version: 1.5.4-5
Severity: serious
Justification: FTBFS
Tags: trixie sid ftbfs
User:
[email protected]
Usertags: ftbfs-20250413 ftbfs-trixie
Hi,
During a rebuild of all packages in testing (trixie), your package failed
to build on arm64.
Relevant part (hopefully):
make[2]: Entering directory '/build/reproducible-path/genomicsdb-1.5.4/obj-aarch64-linux-gnu'
Running tests...
/usr/bin/ctest --force-new-ctest-process --verbose -j4 UpdateCTestConfiguration from :/build/reproducible-path/genomicsdb-1.5.4/obj-aarch64-linux-gnu/DartConfiguration.tcl
UpdateCTestConfiguration from :/build/reproducible-path/genomicsdb-1.5.4/obj-aarch64-linux-gnu/DartConfiguration.tcl
Test project /build/reproducible-path/genomicsdb-1.5.4/obj-aarch64-linux-gnu Constructing a list of tests
Done constructing a list of tests
Updating test list for fixtures
Added 0 tests to meet fixture requirements
Checking test dependency graph...
Checking test dependency graph end
Connected to MAKE jobserver
test 1
Start 1: test_array_schema
1: Test command: /build/reproducible-path/genomicsdb-1.5.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test/test_array_schema
1: Working Directory: /build/reproducible-path/genomicsdb-1.5.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test
1: Test timeout computed to be: 10000000
test 2
Start 2: test_print_array_schema
2: Test command: /build/reproducible-path/genomicsdb-1.5.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test/test_print_array_schema
2: Working Directory: /build/reproducible-path/genomicsdb-1.5.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test
2: Test timeout computed to be: 10000000
test 3
Start 3: test_print_book_keeping
3: Test command: /build/reproducible-path/genomicsdb-1.5.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test/test_print_book_keeping
3: Working Directory: /build/reproducible-path/genomicsdb-1.5.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test
3: Test timeout computed to be: 10000000
test 4
Start 4: test_sparse_array_benchmark
4: Test command: /build/reproducible-path/genomicsdb-1.5.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test/test_sparse_array_benchmark
4: Working Directory: /build/reproducible-path/genomicsdb-1.5.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test
4: Test timeout computed to be: 10000000
1: Randomness seeded to: 2001397775
1: [TileDB::ArraySchema] Error: Cannot set attributes; No attributes given. 1: [TileDB::ArraySchema] Error: Cannot set attributes; The number of attributes must be positive.
1: [TileDB::ArraySchema] Error: Cannot set attributes; Duplicate attribute names.
1: [TileDB::ArraySchema] Error: Cannot set cell order; Invalid cell order.
1: [TileDB::ArraySchema] Error: Unsupported. For a given VAR attribute, both compression and offsets_compression have to either have compression or not
1: .
1: [TileDB::ArraySchema] Error: Cannot set dimensions; No dimensions given. 1: [TileDB::ArraySchema] Error: Cannot set dimensions; The number of dimensions must be positive.
1: [TileDB::ArraySchema] Error: Cannot set dimensions; Duplicate dimension names.
1: [TileDB::ArraySchema] Error: Cannot set dimensions; Attribute name same as dimension name.
1: [TileDB::ArraySchema] Error: Cannot set types; Types not provided.
1: [TileDB::ArraySchema] Error: Cannot set types; Invalid type.
1: [TileDB::ArraySchema] Error: Cannot set domain; Domain not provided.
1: [TileDB::ArraySchema] Error: Cannot set tile order; Invalid tile order.
1: Array Schema Version:
1: 2
1: Array workspace:
1: /build/reproducible-path/genomicsdb-1.5.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test
1: Array name:
1:
1: Dimension names:
1: dim1
1: dim2
1: Attribute names:
1: test_attr
1: test_attr1
1: Domain:
1: dim1: [0,99]
1: dim2: [0,99]
1: Types:
1: test_attr: int32[1]
1: test_attr1: int32[var]
1: Coordinates: int32
1: Cell sizes (in bytes):
1: test_attr: 4
1: test_attr1: var
1: Coordinates: 8
1: Dense:
1: false
1: Tile types:
1: irregular
1: Tile order:
1: -
1: Cell order:
1: column-major
1: Capacity:
1: 10000
1: Tile extents:
1: -
1: Compression for test_attr
1: Type = GZIP
1: Level= -1
1: Compression for test_attr1
1: Type = GZIP
1: Level= -1
1: Compression for offsets of test_attr1
1: Type = GZIP + DELTA_ENCODE
1: Level= -1
1: Compression for Coordinates:
1: Type = GZIP
1: Array Schema Version:
1: 2
1: Array name:
1: this_array
1: Dimension names:
1: one_dim
1: Attribute names:
1: this_attribute
1: Domain:
1: one_dim: [1,100]
1: Types:
1: this_attribute: int32[1]
1: Coordinates: int32
1: Cell sizes (in bytes):
1: this_attribute: 4
1: Coordinates: 4
1: Dense:
1: false
1: Tile types:
1: regular
1: Tile order:
1: row-major
1: Cell order:
1: row-major
1: Capacity:
1: -
1: Tile extents:
1: one_dim: 25
1: Compression for this_attribute
1: Type = NONE
1: Level= -1
1: Compression for Coordinates:
1: Type = NONE
1: Array Schema Version:
1: 2
1: Array name:
1: this_array
1: Dimension names:
1: one_dim
1: Attribute names:
1: this_attribute
1: Domain:
1: one_dim: [1,100]
1: Types:
1: this_attribute: int32[1]
1: Coordinates: int32
1: Cell sizes (in bytes):
1: this_attribute: 4
1: Coordinates: 4
1: Dense:
1: false
1: Tile types:
1: regular
1: Tile order:
1: row-major
1: Cell order:
1: row-major
1: Capacity:
1: -
1: Tile extents:
1: one_dim: 25
1: Compression for this_attribute
1: Type = NONE
1: Level= -1
1: Compression for Coordinates:
1: Type = NONE
1: Array Schema Version:
1: 2
1: Array name:
1: this_array_64
1: Dimension names:
1: one_dim_64
1: Attribute names:
1: this_attribute
1: Domain:
1: one_dim_64: [1,1]
1: Types:
1: this_attribute: int64[1]
1: Coordinates: int64
1: Cell sizes (in bytes):
1: this_attribute: 8
1: Coordinates: 8
1: Dense:
1: false
1: Tile types:
1: regular
1: Tile order:
1: row-major
1: Cell order:
1: row-major
1: Capacity:
1: -
1: Tile extents:
1: one_dim_64: 25
1: Compression for this_attribute
1: Type = NONE
1: Level= -1
1: Compression for Coordinates:
1: Type = NONE
1: ===============================================================================
1: All tests passed (43 assertions in 7 test cases)
1:
2: No arguments specified
2: Usage: test_print_array_schema /path/to/TileDBArray
1/22 Test #1: test_array_schema ................ Passed 0.01 sec
2/22 Test #2: test_print_array_schema .......... Passed 0.00 sec
test 5
Start 5: test_array_iterator
5: Test command: /build/reproducible-path/genomicsdb-1.5.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test/test_array_iterator
5: Working Directory: /build/reproducible-path/genomicsdb-1.5.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test
5: Test timeout computed to be: 10000000
test 6
Start 6: test_array_schema_api
6: Test command: /build/reproducible-path/genomicsdb-1.5.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test/test_array_schema_api
6: Working Directory: /build/reproducible-path/genomicsdb-1.5.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test
6: Test timeout computed to be: 10000000
3: No arguments specified
3: Usage: test_print_book_keeping /path/to/TileDBArray/<fragment>
3/22 Test #3: test_print_book_keeping .......... Passed 0.01 sec
test 7
Start 7: test_dense_array_api
7: Test command: /build/reproducible-path/genomicsdb-1.5.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test/test_dense_array_api
7: Working Directory: /build/reproducible-path/genomicsdb-1.5.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test
7: Test timeout computed to be: 10000000
4: Randomness seeded to: 1376267798
4: ===============================================================================
4: test cases: 1 | 1 passed
4: assertions: - none -
4:
4/22 Test #4: test_sparse_array_benchmark ...... Passed 0.01 sec
test 8
Start 8: test_sparse_array_api
8: Test command: /build/reproducible-path/genomicsdb-1.5.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test/test_sparse_array_api
8: Working Directory: /build/reproducible-path/genomicsdb-1.5.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test
8: Test timeout computed to be: 10000000
5: Randomness seeded to: 2251606868
5: [TileDB::utils] Error: (gzip_handle_error) Cannot compress with GZIP: deflateInit error: Z_STREAM_ERROR
5:
5: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
5: test_array_iterator is a Catch2 v3.7.1 host application.
5: Run with -? for options
5:
5: -------------------------------------------------------------------------------
5: Test sparse array iterator
5: -------------------------------------------------------------------------------
5: ./genomicsdb-tiledb/test/src/c_api/test_array_iterator.cc:194
5: ...............................................................................
5:
5: ./genomicsdb-tiledb/test/src/c_api/test_array_iterator.cc:194: FAILED:
5: {Unknown expression after the reported line}
5: due to a fatal error condition:
5: SIGSEGV - Segmentation violation signal
5:
5: ===============================================================================
5: test cases: 1 | 1 failed
5: assertions: 7 | 6 passed | 1 failed
5:
5/22 Test #5: test_array_iterator ..............***Exception: SegFault 0.01 sec
Randomness seeded to: 2251606868
[TileDB::utils] Error: (gzip_handle_error) Cannot compress with GZIP: deflateInit error: Z_STREAM_ERROR
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
test_array_iterator is a Catch2 v3.7.1 host application.
Run with -? for options
-------------------------------------------------------------------------------
Test sparse array iterator -------------------------------------------------------------------------------
./genomicsdb-tiledb/test/src/c_api/test_array_iterator.cc:194 ...............................................................................
./genomicsdb-tiledb/test/src/c_api/test_array_iterator.cc:194: FAILED:
{Unknown expression after the reported line}
due to a fatal error condition:
SIGSEGV - Segmentation violation signal
===============================================================================
test cases: 1 | 1 failed
assertions: 7 | 6 passed | 1 failed
test 9
Start 9: test_tiledb_utils
9: Test command: /build/reproducible-path/genomicsdb-1.5.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test/test_tiledb_utils
9: Working Directory: /build/reproducible-path/genomicsdb-1.5.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test
9: Test timeout computed to be: 10000000
6: Randomness seeded to: 3189999997
6:
6: ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
6: test_array_schema_api is a Catch2 v3.7.1 host application.
6: Run with -? for options
6:
6: -------------------------------------------------------------------------------
6: Test array schema backward compatibility 2
6: -------------------------------------------------------------------------------
6: ./genomicsdb-tiledb/test/src/c_api/test_array_schema_api.cc:349
6: ...............................................................................
6:
6: ./genomicsdb-tiledb/test/src/c_api/test_array_schema_api.cc:368: FAILED: 6: CHECK( array_schema.compression_level_[1] == -1 )
6: with expansion:
6: 255 == -1
6:
6: ===============================================================================
6: test cases: 13 | 12 passed | 1 failed
6: assertions: 335 | 334 passed | 1 failed
6:
6/22 Test #6: test_array_schema_api ............***Failed 0.01 sec Randomness seeded to: 3189999997
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
test_array_schema_api is a Catch2 v3.7.1 host application.
Run with -? for options
-------------------------------------------------------------------------------
Test array schema backward compatibility 2 -------------------------------------------------------------------------------
./genomicsdb-tiledb/test/src/c_api/test_array_schema_api.cc:349 ...............................................................................
./genomicsdb-tiledb/test/src/c_api/test_array_schema_api.cc:368: FAILED:
CHECK( array_schema.compression_level_[1] == -1 )
with expansion:
255 == -1
===============================================================================
test cases: 13 | 12 passed | 1 failed
assertions: 335 | 334 passed | 1 failed
test 10
Start 10: test_codec
10: Test command: /build/reproducible-path/genomicsdb-1.5.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test/test_codec
10: Working Directory: /build/reproducible-path/genomicsdb-1.5.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test
10: Test timeout computed to be: 10000000
9: Randomness seeded to: 1015850288
9: [TileDB::utils] Error: (set_working_dir) Failed to set_working_dir as /tmp/TileDBTestlesjua/WORKSPACE.nonexistent does not exist
9: [TileDB::FileSystem] Error: (get_dirs) Cannot open directory path=/tmp/TileDBTests02csJ/WORKSPACE errno=2(No such file or directory)
9: [TileDB::FileSystem] Error: (get_files) Cannot open directory path=/tmp/TileDBTests02csJ/WORKSPACE errno=2(No such file or directory)
9: [TileDB::FileSystem] Error: (get_dirs) Cannot open directory path=/tmp/TileDBTest9v2GW6/WORKSPACE errno=2(No such file or directory)
10: Randomness seeded to: 4283861272
10: [TileDB::utils] Error: (gzip_handle_error) Cannot decompress with GZIP: inflate error: Z_BUF_ERROR
10: [TileDB::Codec] Error: Could not decompress with GZIP.
10: [TileDB::utils] Error: (gzip_handle_error) Cannot decompress with GZIP: inflate error: Z_BUF_ERROR
10: [TileDB::Codec] Error: Could not decompress with GZIP.
10: [TileDB::utils] Error: (gzip_handle_error) Cannot decompress with GZIP: inflate error: Z_DATA_ERROR
10: [TileDB::Codec] Error: Could not decompress with GZIP.
10: [TileDB::Codec] Error: Codec for compression type=15 has already been registered.
10: ===============================================================================
10: All tests passed (31 assertions in 5 test cases)
10:
7/22 Test #10: test_codec ....................... Passed 0.01 sec
test 11
Start 11: test_codec_filter
11: Test command: /build/reproducible-path/genomicsdb-1.5.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test/test_codec_filter
11: Working Directory: /build/reproducible-path/genomicsdb-1.5.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test
11: Test timeout computed to be: 10000000
9: 7e820c3ee657b1a27a56a7be9d202a7a7e820c3ee657b1a27a56a7be9d202a7a[TileDB::FileSystem] Error: (read_from_file) EOF reached; File reading error path=/tmp/TileDBTestwBJ4ah/test_file
9: [TileDB::FileSystem] Error: (read_from_file) EOF reached; File reading error path=/tmp/TileDBTestwBJ4ah/test_file
11: Randomness seeded to: 1612411201
11: [TileDB::CodecFilter] Error: virtual method should be overridden.
11: [TileDB::CodecFilter] Error: virtual method should be overridden.
11: [TileDB::CodecFilter] Error: virtual method should be overridden.
11: [TileDB::CodecFilter] Error: virtual method should be overridden.
11: [TileDB::CodecFilter] Error: Tile size to pre-compression filter Delta Encoding should be a multiple of sizeof type.
11: [TileDB::CodecFilter] Error: Tile size to pre-compression filter Delta Encoding should be a multiple of sizeof type.
11: [TileDB::CodecFilter] Error: Tile size to pre-compression filter Delta Encoding should be a multiple of sizeof type.
11: [TileDB::CodecFilter] Error: Tile size to pre-compression filter Delta Encoding should be a multiple of sizeof type.
11: [TileDB::CodecFilter] Error: Tile size to pre-compression filter Delta Encoding should be a multiple of sizeof type.
11: [TileDB::CodecFilter] Error: Tile size to pre-compression filter Delta Encoding should be a multiple of sizeof type.
11: [TileDB::CodecFilter] Error: Tile size to pre-compression filter Delta Encoding should be a multiple of sizeof type.
11: [TileDB::CodecFilter] Error: Tile size to pre-compression filter Delta Encoding should be a multiple of sizeof type.
11: [TileDB::CodecFilter] Error: Tile size to pre-compression filter Delta Encoding should be a multiple of sizeof type.
11: [TileDB::CodecFilter] Error: Tile size to pre-compression filter Delta Encoding should be a multiple of sizeof type.
11: [TileDB::CodecFilter] Error: Tile size to pre-compression filter Delta Encoding should be a multiple of sizeof type.
11: [TileDB::CodecFilter] Error: Tile size to pre-compression filter Delta Encoding should be a multiple of sizeof type.
11: [TileDB::CodecFilter] Error: Tile size to pre-compression filter Delta Encoding should be a multiple of sizeof type.
11: [TileDB::CodecFilter] Error: Tile size to pre-compression filter Delta Encoding should be a multiple of sizeof type.
11: [TileDB::CodecFilter] Error: Tile size to pre-compression filter Bit Shuffle should be a multiple of sizeof type.
11: [TileDB::CodecFilter] Error: Tile size to pre-compression filter Bit Shuffle should be a multiple of sizeof type.
11: [TileDB::CodecFilter] Error: Tile size to pre-compression filter Bit Shuffle should be a multiple of sizeof type.
11: [TileDB::CodecFilter] Error: Tile size to pre-compression filter Bit Shuffle should be a multiple of sizeof type.
11: [TileDB::CodecFilter] Error: Tile size to pre-compression filter Bit Shuffle should be a multiple of sizeof type.
11: [TileDB::CodecFilter] Error: Tile size to pre-compression filter Bit Shuffle should be a multiple of sizeof type.
11: [TileDB::CodecFilter] Error: Tile size to pre-compression filter Bit Shuffle should be a multiple of sizeof type.
11: [TileDB::CodecFilter] Error: Tile size to pre-compression filter Bit Shuffle should be a multiple of sizeof type.
11: [TileDB::CodecFilter] Error: Tile size to pre-compression filter Bit Shuffle should be a multiple of sizeof type.
11: [TileDB::CodecFilter] Error: Tile size to pre-compression filter Bit Shuffle should be a multiple of sizeof type.
11: ===============================================================================
11: All tests passed (192 assertions in 2 test cases)
11:
8/22 Test #11: test_codec_filter ................ Passed 0.00 sec
test 12
Start 12: test_expressions
12: Test command: /build/reproducible-path/genomicsdb-1.5.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test/test_expressions
12: Working Directory: /build/reproducible-path/genomicsdb-1.5.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test
12: Test timeout computed to be: 10000000
12: Randomness seeded to: 2406179012
12: [TileDB::Expression] Error: (evaluate_cell) Parser evaluate error, possibly due to bad filter expression:
12: Index to variable "a1" is out of bounds.
12: [TileDB::Expression] Error: (evaluate_cell) Parser evaluate error, possibly due to bad filter expression:
12: Index to variable "a1" is out of bounds.
12: [TileDB::Expression] Error: (evaluate_cell) Parser evaluate error, possibly due to bad filter expression:
12: Index to variable "a1" is out of bounds.
12: [TileDB::Expression] Error: (evaluate_cell) Parser evaluate error, possibly due to bad filter expression:
12: Index to variable "a1" is out of bounds.
12: [TileDB::Expression] Error: (evaluate_cell) Parser evaluate error, possibly due to bad filter expression:
12: Index to variable "a1" is out of bounds.
12: [TileDB::Expression] Error: (evaluate_cell) Parser evaluate error, possibly due to bad filter expression:
12: Index to variable "a1" is out of bounds.
12: [TileDB::Expression] Error: (evaluate_cell) Parser evaluate error, possibly due to bad filter expression:
12: Index to variable "a1" is out of bounds.
12: [TileDB::Expression] Error: (evaluate_cell) Parser evaluate error, possibly due to bad filter expression:
12: Index to variable "a1" is out of bounds.
12: [TileDB::Expression] Error: (evaluate_cell) Parser evaluate error, possibly due to bad filter expression:
12: Index to variable "a1" is out of bounds.
12: [TileDB::Expression] Error: (evaluate_cell) Parser evaluate error, possibly due to bad filter expression:
12: Index to variable "a1" is out of bounds.
12: [TileDB::Expression] Error: (evaluate_cell) Parser evaluate error, possibly due to bad filter expression:
12: Index to variable "a1" is out of bounds.
12: [TileDB::Expression] Error: (evaluate_cell) Parser evaluate error, possibly due to bad filter expression:
12: Index to variable "a1" is out of bounds.
12: [TileDB::Expression] Error: (evaluate_cell) Parser evaluate error, possibly due to bad filter expression:
12: Index to variable "a1" is out of bounds.
12: [TileDB::Expression] Error: (evaluate_cell) Parser evaluate error, possibly due to bad filter expression:
12: Index to variable "a1" is out of bounds.
12: [TileDB::Expression] Error: (evaluate_cell) Parser evaluate error, possibly due to bad filter expression:
12: Index to variable "a1" is out of bounds.
12: [TileDB::Expression] Error: (evaluate_cell) Parser evaluate error, possibly due to bad filter expression:
12: Index to variable "a1" is out of bounds.
12: [TileDB::Expression] Error: (evaluate_cell) Parser evaluate error, possibly due to bad filter expression:
12: Index to variable "a1" is out of bounds.
12: [TileDB::Expression] Error: (evaluate_cell) Parser evaluate error, possibly due to bad filter expression:
12: Index to variable "a1" is out of bounds.
12: [TileDB::Expression] Error: (evaluate_cell) Parser evaluate error, possibly due to bad filter expression:
12: Index to variable "a1" is out of bounds.
12: [TileDB::Expression] Error: (evaluate_cell) Parser evaluate error, possibly due to bad filter expression:
12: Index to variable "a1" is out of bounds.
12: [TileDB::Expression] Error: (init) Attribute a2 in expression filter not present in the array schema
12: [TileDB::Expression] Error: (init) Parser SetExpr error for expression 'a1 === 22': Unexpected operator "=" found at position 5.
12: [TileDB::Expression] Error: (evaluate) Initialization not completed
12: [TileDB::Expression] Error: (evaluate_cell) Initialization not completed 12: [TileDB::Expression] Error: (evaluate_cell) Only expressions evaluating to booleans is supported
12: [TileDB::Expression] Error: (init) Parser SetExpr error for expression 'resolve(a1) &= ""': Too few parameters passed to function "resolve".
12: [TileDB::Expression] Error: (init) Expression parsing for dense arrays not yet implemented
12: ===============================================================================
12: All tests passed (3334 assertions in 83 test cases)
12:
9/22 Test #12: test_expressions ................. Passed 0.02 sec
test 13
Start 13: test_filter_api
13: Test command: /build/reproducible-path/genomicsdb-1.5.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test/test_filter_api
13: Working Directory: /build/reproducible-path/genomicsdb-1.5.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test
13: Test timeout computed to be: 10000000
13: Randomness seeded to: 75739269
13: ===============================================================================
13: All tests passed (288 assertions in 3 test cases)
13:
10/22 Test #13: test_filter_api .................. Passed 0.02 sec
test 14
Start 14: test_mem_utils
14: Test command: /build/reproducible-path/genomicsdb-1.5.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test/test_mem_utils
14: Working Directory: /build/reproducible-path/genomicsdb-1.5.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test
14: Test timeout computed to be: 10000000
14: Randomness seeded to: 2944208117
14: Sun Apr 13 13:46:20 2025 Memory stats Tracking memory usage START size=6MB resident=1MB share=1MB text=604KB lib=0 data=540KB dt=0
9: ===============================================================================
9: All tests passed (10488234 assertions in 9 test cases)
9:
11/22 Test #9: test_tiledb_utils ................ Passed 0.58 sec
test 15
Start 15: test_uri
15: Test command: /build/reproducible-path/genomicsdb-1.5.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test/test_uri
15: Working Directory: /build/reproducible-path/genomicsdb-1.5.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test
15: Test timeout computed to be: 10000000
15: Randomness seeded to: 4126063120
15: ===============================================================================
15: All tests passed (113 assertions in 1 test case)
15:
12/22 Test #15: test_uri ......................... Passed 0.01 sec
test 16
Start 16: test_utils
16: Test command: /build/reproducible-path/genomicsdb-1.5.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test/test_utils
16: Working Directory: /build/reproducible-path/genomicsdb-1.5.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test
16: Test timeout computed to be: 10000000
16: Randomness seeded to: 3085543028
16: [TileDB::utils] Error: (RLE_compress) Failed compressing with RLE; invalid input buffer format
16: [TileDB::utils] Error: (RLE_compress) Failed compressing with RLE; output buffer overflow
16: [TileDB::utils] Error: (RLE_compress_coords_row) Failed compressing coordinates with RLE; invalid buffer format
16: [TileDB::utils] Error: (RLE_compress_coords_row) Filed compressing coordinates with RLE; output buffer overflow
16: [TileDB::utils] Error: (RLE_compress_coords_col) Failed compressing coordinates with RLE; invalid buffer format
16: [TileDB::utils] Error: (RLE_compress_coords_col) Failed compressing coordinates with RLE; output buffer overflow
16: [TileDB::FileSystem] Error: (create_dir) Cannot create directory path=/non-existent-dir/dir errno=2(No such file or directory)
16: [TileDB::FileSystem] Error: (create_file) Failed to create file path=/non-existent-dir/file errno=2(No such file or directory)
16: [TileDB::FileSystem] Error: (write_to_file) Cannot write to file; File opening error path=/non-existent-dir/file errno=2(No such file or directory)
16: [TileDB::FileSystem] Error: (read_from_file) Cannot read from file; File opening error path=/non-existent-dir/file errno=2(No such file or directory)
16: [TileDB::FileSystem] Error: (delete_file) Cannot remove file path=/non-existent-dir/file errno=2(No such file or directory)
16: [TileDB::FileSystem] Error: (delete_dir) Could not recursively delete directory path=/non-existent-dir/dir errno=2(No such file or directory)
16: [TileDB::FileSystem] Error: (move_path) Cannot rename path path=/non-existent-dir/old errno=2(No such file or directory)
16: ===============================================================================
16: All tests passed (86 assertions in 6 test cases)
16:
13/22 Test #16: test_utils ....................... Passed 0.02 sec
test 17
Start 17: test_posixfs
17: Test command: /build/reproducible-path/genomicsdb-1.5.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test/test_posixfs
17: Working Directory: /build/reproducible-path/genomicsdb-1.5.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test
17: Test timeout computed to be: 10000000
17: Randomness seeded to: 3934059981
17: [TileDB::FileSystem] Error: (create_dir) Cannot create directory; Directory already exists path=/tmp/TileDBTestxuGWDJ/test_posixfs_dirdir
17: [TileDB::FileSystem] Error: (create_dir) Cannot create directory path=/non-existent-dir/foo errno=2(No such file or directory)
17: [TileDB::FileSystem] Error: (create_file) Failed to create file path=/tmp/TileDBTestxuGWDJ/test_posixfs_dirdir errno=21(Is a directory)
17: [TileDB::FileSystem] Error: (create_file) Failed to create file path=/tmp/TileDBTestxuGWDJ/test_posixfs_dirdir errno=21(Is a directory)
17: [TileDB::FileSystem] Error: (get_dirs) Cannot open directory path=non-existent-dir errno=2(No such file or directory)
17: [TileDB::FileSystem] Error: (move_path) Cannot rename path path=non-existent-dir errno=18(Invalid cross-device link)
17: [TileDB::FileSystem] Error: (delete_dir) Could not recursively delete directory path=non-existent-dir errno=2(No such file or directory)
17: [TileDB::FileSystem] Error: (get_files) Cannot open directory path=non-existent-dir errno=2(No such file or directory)
17: [TileDB::FileSystem] Error: (delete_file) Cannot remove file path=/tmp/TileDBTestRfp6d4/test_posixfs_dirfile/foo1 errno=2(No such file or directory)
17: [TileDB::FileSystem] Error: (read_from_file) EOF reached; File reading error path=/tmp/TileDBTestnowTrR/test_posixfs_dirread_write/foo
17: [TileDB::FileSystem] Error: (read_from_file) EOF reached; File reading error path=/tmp/TileDBTestnowTrR/test_posixfs_dirread_write/foo
17: [TileDB::FileSystem] Error: (read_from_file) EOF reached; File reading error path=/tmp/TileDBTestnowTrR/test_posixfs_dirread_write/foo
17: [TileDB::FileSystem] Error: (read_from_file) Cannot read from file; File opening error path=non-existent-dir/foo errno=2(No such file or directory)
17: [TileDB::FileSystem] Error: (write_to_file) Cannot write to file; File opening error path=non-existent-dir/foo errno=2(No such file or directory)
17: [TileDB::FileSystem] Error: (read_from_file) Cannot open simultaneously for reads/writes path=test_posixfs_dir_locking/foo
17: [TileDB::FileSystem] Error: (~PosixFS) File does not seem to be closed path=test_dir_locking1/foo_sync
17: [TileDB::FileSystem] Error: (~PosixFS) File does not seem to be closed path=test_dir_locking1/foo_no_close
17: ===============================================================================
17: All tests passed (258 assertions in 11 test cases)
17:
14/22 Test #17: test_posixfs ..................... Passed 0.41 sec
test 18
Start 18: test_storage_buffer
18: Test command: /build/reproducible-path/genomicsdb-1.5.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test/test_storage_buffer
18: Working Directory: /build/reproducible-path/genomicsdb-1.5.4/obj-aarch64-linux-gnu/genomicsdb-tiledb/test
18: Test timeout computed to be: 10000000
18: Randomness seeded to: 2865397563
18: [TileDB::StorageBuffer] Error: (StorageBuffer) Cannot perform buffered reads or writes as there is no buffer chunk size set path=/tmp/TileDBTestuT4N1H/test-file
18: [TileDB::StorageBuffer] Error: (StorageBuffer) File does not seem to exist or is of zero length path=/tmp/TileDBTestuT4N1H/test-file-non-existent errno=2(No such file or directory)
18: [TileDB::StorageBuffer] Error: (StorageBuffer) Cannot perform buffered reads or writes as there is no buffer chunk size set path=/tmp/TileDBTestuT4N1H/test-file
18: [TileDB::StorageBuffer] Error: (read_buffer) Cannot read past the filesize from buffer path=/tmp/TileDBTestuT4N1H/test-file
18: [TileDB::FileSystem] Error: (write_to_file) Cannot write to file; File opening error path=/non-existent-file errno=13(Permission denied)
18: [TileDB::StorageBuffer] Error: (write_buffer) Cannot write bytes path=/non-existent-file errno=13(Permission denied)
18: [TileDB::StorageBuffer] Error: (finalize) Could not finalize buffer after compression path=/non-existent-file errno=13(Permission denied)
18: [TileDB::FileSystem] Error: (write_to_file) Cannot write to file; File opening error path=/non-existent-file errno=13(Permission denied)
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